Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MIR3664-201ENST00000579074 99 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AC008088.1-201ENST00000580993 280 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AP001981.2-201ENST00000603241 418 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 BNIP3P31-201ENST00000604515 566 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.13□□□□□ -2.39
CHD9Q3L8U1 SNORD3E-201ENST00000362899 217 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 RNA5SP205-201ENST00000364653 136 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 RNU6-438P-201ENST00000365561 103 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 MIR224-201ENST00000384889 81 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC092634.6-201ENST00000418558 192 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 ELOCP9-201ENST00000418624 239 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC092423.1-201ENST00000430165 186 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC010153.1-201ENST00000432862 727 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC092427.1-201ENST00000439177 601 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC016717.1-201ENST00000448918 286 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 snoU13.21-201ENST00000459368 105 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC011005.2-201ENST00000487324 359 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.13□□□□□ -2.39
CHD9Q3L8U1 MTCYBP33-201ENST00000575007 1130 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 MIR4645-201ENST00000583158 77 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 HSPE1P19-201ENST00000603327 295 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AP000860.1-201ENST00000605250 559 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC010975.3-201ENST00000618727 978 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 RNU6-1237P-201ENST00000384777 107 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 Y_RNA.583-201ENST00000391033 113 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 MIR1185-1-201ENST00000408598 86 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.13□□□□□ -2.39
CHD9Q3L8U1 LINC01399-202ENST00000458450 244 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 MTCYBP43-201ENST00000513621 740 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 RNU6-927P-201ENST00000516199 100 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 RNVU1-2-201ENST00000516326 135 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC004987.4-201ENST00000603383 338 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC107304.1-201ENST00000604229 296 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC112220.3-201ENST00000605502 502 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC093913.1-201ENST00000614178 329 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AC106858.1-201ENST00000637497 429 ntBASIC0.13□□□□□ -2.39
CHD9Q3L8U1 AL079343.1-201ENST00000572358 1771 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 RNU6-701P-201ENST00000384059 107 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 RNY3P5-201ENST00000384127 102 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AL121578.1-201ENST00000428051 892 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 MTND4P25-201ENST00000441039 533 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 RPL30P7-201ENST00000479312 323 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AC022861.1-201ENST00000522981 663 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AL513534.2-201ENST00000603836 250 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AL391994.1-201ENST00000254724 282 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 RNU4-9P-201ENST00000364951 139 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 SNORA12-201ENST00000391162 147 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AL592310.1-201ENST00000414330 671 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 ARL5AP1-201ENST00000418991 388 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 MTCYBP1-201ENST00000454315 1119 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 MTND1P3-201ENST00000484956 952 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AP003392.2-201ENST00000527269 208 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 Y_RNA.203-201ENST00000364106 102 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 RNU4-45P-201ENST00000365469 141 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 SNORA48.1-201ENST00000390879 135 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 PTGES3P4-201ENST00000426243 356 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 RPS15AP10-201ENST00000432472 382 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AC245047.7-201ENST00000440265 293 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 BRK1P2-201ENST00000442875 223 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 7SK.10-201ENST00000621414 298 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC0.12□□□□□ -2.39
CHD9Q3L8U1 MIR4315-1-201ENST00000636800 73 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 MIR4315-2-201ENST00000640925 73 ntBASIC0.12□□□□□ -2.39
CHD9Q3L8U1 Y_RNA.99-201ENST00000363138 105 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 SNORD118-201ENST00000363593 134 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 Y_RNA.234-201ENST00000364409 97 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 RNU6-898P-201ENST00000365627 104 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 RNU6-1274P-201ENST00000384557 107 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 RNU2-42P-201ENST00000410697 113 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 MTND4LP11-201ENST00000422184 280 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.11□□□□□ -2.39
CHD9Q3L8U1 BTF3P15-201ENST00000455606 336 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 HMGB1P30-201ENST00000492455 606 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.11□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms