Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNU6-560P-201ENST00000364007 108 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 RNA5SP259-201ENST00000365541 109 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 RNU6-438P-201ENST00000365561 103 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 RNU5E-6P-201ENST00000365574 115 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 RNU6-1179P-201ENST00000384667 107 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 MTCO1P21-201ENST00000416634 589 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 COX6CP10-201ENST00000416832 224 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.38□□□□□ -2.35
FOXA3P55318 ARL5AP1-201ENST00000418991 388 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC0.38□□□□□ -2.35
FOXA3P55318 MTND4P20-201ENST00000424125 869 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 RAB28P5-201ENST00000427490 651 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 RPL23AP30-201ENST00000432419 501 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.38□□□□□ -2.35
FOXA3P55318 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC0.38□□□□□ -2.35
FOXA3P55318 ATP5EP1-201ENST00000510257 156 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 RNU6-237P-201ENST00000515985 71 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 LRRC6P1-201ENST00000532188 885 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.38□□□□□ -2.35
FOXA3P55318 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.38□□□□□ -2.35
FOXA3P55318 MIR544B-201ENST00000582372 78 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 AC022432.1-201ENST00000595739 310 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC0.38□□□□□ -2.35
FOXA3P55318 AL353778.1-201ENST00000603149 408 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 AL596327.1-201ENST00000603629 213 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 AL138889.2-201ENST00000603883 242 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 AL022154.1-201ENST00000604698 785 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 AC009229.3-201ENST00000608056 282 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 AC104465.1-201ENST00000611365 139 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 AC097372.5-201ENST00000623665 376 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 AL359757.2-201ENST00000624309 274 ntBASIC0.38□□□□□ -2.35
FOXA3P55318 AL391994.1-201ENST00000254724 282 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 RNU6-1123P-201ENST00000362347 106 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 RNU6-462P-201ENST00000362659 105 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 RNU1-93P-201ENST00000364704 169 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 RNU6-621P-201ENST00000364752 109 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 RNU6-384P-201ENST00000364900 104 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 MIR605-201ENST00000385078 83 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 RNU6-910P-201ENST00000390844 107 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.37□□□□□ -2.35
FOXA3P55318 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.37□□□□□ -2.35
FOXA3P55318 AC007969.2-201ENST00000441891 191 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 BTBD7P2-201ENST00000441962 620 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 AC073910.1-201ENST00000445047 438 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.37□□□□□ -2.35
FOXA3P55318 NDUFB1P2-201ENST00000449477 176 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 MTCO3P9-201ENST00000506989 781 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 AC079395.1-201ENST00000510981 262 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 SNORA31.2-201ENST00000516019 134 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 RN7SKP49-201ENST00000516675 260 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.37□□□□□ -2.35
FOXA3P55318 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.37□□□□□ -2.35
FOXA3P55318 AL121579.1-201ENST00000555129 305 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC0.37□□□□□ -2.35
FOXA3P55318 MIR4709-201ENST00000577272 72 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 MIR3146-201ENST00000580367 79 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC0.37□□□□□ -2.35
FOXA3P55318 FRG1KP-201ENST00000623592 341 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 AL356596.1-201ENST00000624230 379 ntBASIC0.37□□□□□ -2.35
FOXA3P55318 RNA5SP361-201ENST00000362686 118 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 RNY1P10-201ENST00000363268 113 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 Y_RNA.124-201ENST00000363339 93 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 RNA5SP499-201ENST00000363982 119 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 RNU1-96P-201ENST00000364163 162 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 SNORA4.2-201ENST00000365313 147 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 Y_RNA.338-201ENST00000365320 114 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 RNU6-17P-201ENST00000384245 107 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 RNU6-769P-201ENST00000384407 104 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 RNU6-18P-201ENST00000384527 107 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC0.36□□□□□ -2.35
FOXA3P55318 TRIM60P10Y-201ENST00000425589 751 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AC002429.1-201ENST00000437672 148 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.36□□□□□ -2.35
FOXA3P55318 RPL39P38-201ENST00000467018 153 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 SNRPGP7-201ENST00000469016 106 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 MTND3P5-201ENST00000512798 333 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 RNU6-1053P-201ENST00000515930 101 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 RNU6-1041P-201ENST00000516254 102 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 RNU4-54P-201ENST00000516428 129 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AL590705.4-201ENST00000532209 134 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AC013828.2-201ENST00000532487 235 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AC023050.2-201ENST00000544968 387 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AL442163.3-201ENST00000554110 156 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.36□□□□□ -2.35
FOXA3P55318 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.36□□□□□ -2.35
FOXA3P55318 AC109446.1-201ENST00000566172 220 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AC109446.2-201ENST00000567872 497 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC0.36□□□□□ -2.35
FOXA3P55318 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.36□□□□□ -2.35
FOXA3P55318 AC110760.3-201ENST00000598794 467 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AC068790.6-201ENST00000602558 258 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AC174048.1-201ENST00000603389 144 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 BCRP9-201ENST00000605312 388 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AC018889.1-201ENST00000605372 397 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AC024060.1-201ENST00000607052 494 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AC091965.4-201ENST00000607691 587 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AC108747.1-201ENST00000609508 535 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms