Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
NUP98P52948 RNU6-777P-201ENST00000364265 104 ntBASIC0.59□□□□□ -2.31
NUP98P52948 Y_RNA.458-201ENST00000384240 102 ntBASIC0.59□□□□□ -2.31
NUP98P52948 RNU6-296P-201ENST00000384608 107 ntBASIC0.59□□□□□ -2.31
NUP98P52948 MIR19B1-201ENST00000384829 87 ntBASIC0.59□□□□□ -2.31
NUP98P52948 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.59□□□□□ -2.31
NUP98P52948 OR2AQ1P-201ENST00000451972 200 ntBASIC0.59□□□□□ -2.31
NUP98P52948 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC0.59□□□□□ -2.31
NUP98P52948 AC097473.1-201ENST00000508142 408 ntBASIC0.59□□□□□ -2.31
NUP98P52948 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC0.59□□□□□ -2.31
NUP98P52948 AC005741.1-201ENST00000511094 432 ntBASIC0.59□□□□□ -2.31
NUP98P52948 BNIP3P6-201ENST00000549284 499 ntBASIC0.59□□□□□ -2.31
NUP98P52948 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.59□□□□□ -2.31
NUP98P52948 AC078795.2-201ENST00000602835 1252 ntBASIC0.59□□□□□ -2.31
NUP98P52948 AL138889.2-201ENST00000603883 242 ntBASIC0.59□□□□□ -2.31
NUP98P52948 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.59□□□□□ -2.31
NUP98P52948 RNU5E-6P-201ENST00000365574 115 ntBASIC0.59□□□□□ -2.32
NUP98P52948 RNU6-72P-201ENST00000384285 79 ntBASIC0.59□□□□□ -2.32
NUP98P52948 MIR515-2-201ENST00000384883 83 ntBASIC0.59□□□□□ -2.32
NUP98P52948 MIR515-1-201ENST00000384884 83 ntBASIC0.59□□□□□ -2.32
NUP98P52948 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.59□□□□□ -2.32
NUP98P52948 RNU6-817P-201ENST00000391083 104 ntBASIC0.59□□□□□ -2.32
NUP98P52948 MTCO1P27-201ENST00000448269 226 ntBASIC0.59□□□□□ -2.32
NUP98P52948 RPL31P3-201ENST00000458430 332 ntBASIC0.59□□□□□ -2.32
NUP98P52948 snoU13.27-201ENST00000459278 104 ntBASIC0.59□□□□□ -2.32
NUP98P52948 AC079395.1-201ENST00000510981 262 ntBASIC0.59□□□□□ -2.32
NUP98P52948 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.59□□□□□ -2.32
NUP98P52948 AC109446.1-201ENST00000566172 220 ntBASIC0.59□□□□□ -2.32
NUP98P52948 MIR4653-201ENST00000585107 83 ntBASIC0.59□□□□□ -2.32
NUP98P52948 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.59□□□□□ -2.32
NUP98P52948 AC008751.2-201ENST00000597885 980 ntBASIC0.59□□□□□ -2.32
NUP98P52948 AC023158.2-201ENST00000614876 543 ntBASIC0.59□□□□□ -2.32
NUP98P52948 RNU6-212P-201ENST00000362642 104 ntBASIC0.58□□□□□ -2.32
NUP98P52948 FCF1P10-201ENST00000407590 479 ntBASIC0.58□□□□□ -2.32
NUP98P52948 RN7SKP266-201ENST00000410232 287 ntBASIC0.58□□□□□ -2.32
NUP98P52948 USP9YP33-201ENST00000412220 421 ntBASIC0.58□□□□□ -2.32
NUP98P52948 AC098934.3-201ENST00000430450 190 ntBASIC0.58□□□□□ -2.32
NUP98P52948 AC099677.2-201ENST00000436385 175 ntBASIC0.58□□□□□ -2.32
NUP98P52948 snoU13.30-201ENST00000458951 104 ntBASIC0.58□□□□□ -2.32
NUP98P52948 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC0.58□□□□□ -2.32
NUP98P52948 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC0.58□□□□□ -2.32
NUP98P52948 AC004817.2-201ENST00000561794 651 ntBASIC0.58□□□□□ -2.32
NUP98P52948 MIR2909-201ENST00000617113 69 ntBASIC0.58□□□□□ -2.32
NUP98P52948 AC004808.1-201ENST00000627671 721 ntBASIC0.58□□□□□ -2.32
NUP98P52948 AL163152.1-201ENST00000642001 374 ntBASIC0.58□□□□□ -2.32
NUP98P52948 AC010615.1-201ENST00000594254 1764 ntBASIC0.58□□□□□ -2.32
NUP98P52948 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
NUP98P52948 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.57□□□□□ -2.32
NUP98P52948 SNORA12-201ENST00000391162 147 ntBASIC0.57□□□□□ -2.32
NUP98P52948 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.57□□□□□ -2.32
NUP98P52948 MTCO3P41-201ENST00000414801 328 ntBASIC0.57□□□□□ -2.32
NUP98P52948 AC114737.2-201ENST00000421583 173 ntBASIC0.57□□□□□ -2.32
NUP98P52948 AC013262.1-201ENST00000426710 252 ntBASIC0.57□□□□□ -2.32
NUP98P52948 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.57□□□□□ -2.32
NUP98P52948 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.57□□□□□ -2.32
NUP98P52948 RSL24D1P8-201ENST00000434442 492 ntBASIC0.57□□□□□ -2.32
NUP98P52948 LARP1BP3-201ENST00000437229 869 ntBASIC0.57□□□□□ -2.32
NUP98P52948 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.57□□□□□ -2.32
NUP98P52948 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC0.57□□□□□ -2.32
NUP98P52948 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.57□□□□□ -2.32
NUP98P52948 AP003049.1-201ENST00000529418 457 ntBASIC0.57□□□□□ -2.32
NUP98P52948 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.57□□□□□ -2.32
NUP98P52948 AC025678.1-201ENST00000567861 338 ntBASIC0.57□□□□□ -2.32
NUP98P52948 AC090578.1-201ENST00000604955 591 ntBASIC0.57□□□□□ -2.32
NUP98P52948 BX284668.6-201ENST00000606899 438 ntBASIC0.57□□□□□ -2.32
NUP98P52948 SCARNA4-202ENST00000625402 129 ntBASIC0.57□□□□□ -2.32
NUP98P52948 Y_RNA.33-201ENST00000362591 102 ntBASIC0.57□□□□□ -2.32
NUP98P52948 Y_RNA.132-201ENST00000363421 102 ntBASIC0.57□□□□□ -2.32
NUP98P52948 Y_RNA.433-201ENST00000384089 102 ntBASIC0.57□□□□□ -2.32
NUP98P52948 RNU6-1054P-201ENST00000411293 104 ntBASIC0.57□□□□□ -2.32
NUP98P52948 MTCO1P21-201ENST00000416634 589 ntBASIC0.57□□□□□ -2.32
NUP98P52948 AL606490.4-201ENST00000423117 127 ntBASIC0.57□□□□□ -2.32
NUP98P52948 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC0.57□□□□□ -2.32
NUP98P52948 RPS27AP8-201ENST00000452665 445 ntBASIC0.57□□□□□ -2.32
NUP98P52948 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.57□□□□□ -2.32
NUP98P52948 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC0.57□□□□□ -2.32
NUP98P52948 AL139824.2-201ENST00000458731 1095 ntBASIC0.57□□□□□ -2.32
NUP98P52948 SUMO2P18-201ENST00000518873 252 ntBASIC0.57□□□□□ -2.32
NUP98P52948 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.57□□□□□ -2.32
NUP98P52948 AC136932.1-201ENST00000574771 208 ntBASIC0.57□□□□□ -2.32
NUP98P52948 AL359547.2-201ENST00000615810 418 ntBASIC0.57□□□□□ -2.32
NUP98P52948 AC120349.3-201ENST00000624377 529 ntBASIC0.57□□□□□ -2.32
NUP98P52948 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.56□□□□□ -2.32
NUP98P52948 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.56□□□□□ -2.32
NUP98P52948 TXNL1P1-201ENST00000429528 554 ntBASIC0.56□□□□□ -2.32
NUP98P52948 MTND4P15-201ENST00000437913 1033 ntBASIC0.56□□□□□ -2.32
NUP98P52948 AP003355.1-201ENST00000518956 587 ntBASIC0.56□□□□□ -2.32
NUP98P52948 OR8K2P-201ENST00000524645 927 ntBASIC0.56□□□□□ -2.32
NUP98P52948 VN1R82P-201ENST00000601481 356 ntBASIC0.56□□□□□ -2.32
NUP98P52948 AL136363.2-201ENST00000604173 851 ntBASIC0.56□□□□□ -2.32
NUP98P52948 AC069114.2-201ENST00000604699 304 ntBASIC0.56□□□□□ -2.32
NUP98P52948 AC063943.3-201ENST00000615562 356 ntBASIC0.56□□□□□ -2.32
NUP98P52948 AL158163.2-201ENST00000619110 700 ntBASIC0.56□□□□□ -2.32
NUP98P52948 AL391516.1-201ENST00000554380 2449 ntBASIC0.56□□□□□ -2.32
NUP98P52948 RNY3P13-201ENST00000365542 102 ntBASIC0.55□□□□□ -2.32
NUP98P52948 RNU6-733P-201ENST00000410759 104 ntBASIC0.55□□□□□ -2.32
NUP98P52948 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC0.55□□□□□ -2.32
NUP98P52948 AC123900.1-201ENST00000420390 96 ntBASIC0.55□□□□□ -2.32
NUP98P52948 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.55□□□□□ -2.32
NUP98P52948 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms