Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.58□□□□□ -2
HOXD3P31249 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.58□□□□□ -2
HOXD3P31249 AC104581.2-201ENST00000572227 430 ntBASIC2.58□□□□□ -2
HOXD3P31249 AC090897.2-201ENST00000581715 130 ntBASIC2.58□□□□□ -2
HOXD3P31249 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC2.58□□□□□ -2
HOXD3P31249 VN1R91P-201ENST00000594377 169 ntBASIC2.58□□□□□ -2
HOXD3P31249 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC2.58□□□□□ -2
HOXD3P31249 MIR6852-201ENST00000621699 66 ntBASIC2.58□□□□□ -2
HOXD3P31249 MIR3529-201ENST00000637713 78 ntBASIC2.58□□□□□ -2
HOXD3P31249 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.58□□□□□ -2
HOXD3P31249 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.58□□□□□ -2
HOXD3P31249 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HOXD3P31249 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.58□□□□□ -2
HOXD3P31249 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
HOXD3P31249 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
HOXD3P31249 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
HOXD3P31249 FAM35CP-201ENST00000554755 2470 ntBASIC2.58□□□□□ -2
HOXD3P31249 AP003122.5-201ENST00000527668 3766 ntBASIC2.57□□□□□ -2
HOXD3P31249 RNU6-222P-201ENST00000362438 107 ntBASIC2.57□□□□□ -2
HOXD3P31249 Y_RNA.26-201ENST00000362539 101 ntBASIC2.57□□□□□ -2
HOXD3P31249 Y_RNA.210-201ENST00000364161 110 ntBASIC2.57□□□□□ -2
HOXD3P31249 RNA5SP139-201ENST00000364340 117 ntBASIC2.57□□□□□ -2
HOXD3P31249 U3.13-201ENST00000364804 214 ntBASIC2.57□□□□□ -2
HOXD3P31249 RNU6-505P-201ENST00000384427 107 ntBASIC2.57□□□□□ -2
HOXD3P31249 MIR184-201ENST00000384962 84 ntBASIC2.57□□□□□ -2
HOXD3P31249 RNU6-1109P-201ENST00000391187 107 ntBASIC2.57□□□□□ -2
HOXD3P31249 AC245291.1-201ENST00000419501 328 ntBASIC2.57□□□□□ -2
HOXD3P31249 PTGES3P4-201ENST00000426243 356 ntBASIC2.57□□□□□ -2
HOXD3P31249 AL365496.1-201ENST00000426885 215 ntBASIC2.57□□□□□ -2
HOXD3P31249 RPS29P12-201ENST00000460178 152 ntBASIC2.57□□□□□ -2
HOXD3P31249 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.57□□□□□ -2
HOXD3P31249 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.57□□□□□ -2
HOXD3P31249 RNA5SP341-201ENST00000516261 117 ntBASIC2.57□□□□□ -2
HOXD3P31249 RN7SKP282-201ENST00000516824 299 ntBASIC2.57□□□□□ -2
HOXD3P31249 Y_RNA.715-201ENST00000517082 110 ntBASIC2.57□□□□□ -2
HOXD3P31249 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.57□□□□□ -2
HOXD3P31249 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC2.57□□□□□ -2
HOXD3P31249 MIR4325-201ENST00000583049 90 ntBASIC2.57□□□□□ -2
HOXD3P31249 MIR4298-201ENST00000584380 73 ntBASIC2.57□□□□□ -2
HOXD3P31249 RPL23AP78-201ENST00000599928 470 ntBASIC2.57□□□□□ -2
HOXD3P31249 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.57□□□□□ -2
HOXD3P31249 AC016727.2-201ENST00000603988 621 ntBASIC2.57□□□□□ -2
HOXD3P31249 RPL23AP88-201ENST00000605759 454 ntBASIC2.57□□□□□ -2
HOXD3P31249 RNVU1-4-201ENST00000612985 164 ntBASIC2.57□□□□□ -2
HOXD3P31249 AL450472.1-202ENST00000637286 180 ntBASIC2.57□□□□□ -2
HOXD3P31249 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.57□□□□□ -2
HOXD3P31249 AC010680.1-201ENST00000590024 3590 ntBASIC2.57□□□□□ -2
HOXD3P31249 AC017071.1-201ENST00000564407 2204 ntBASIC2.57□□□□□ -2
HOXD3P31249 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
HOXD3P31249 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.56□□□□□ -2
HOXD3P31249 MTND5P27-201ENST00000428871 1720 ntBASIC2.56□□□□□ -2
HOXD3P31249 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
HOXD3P31249 AL356274.2-201ENST00000624379 3752 ntBASIC2.56□□□□□ -2
HOXD3P31249 GABRG2-229ENST00000641017 3628 ntBASIC2.56□□□□□ -2
HOXD3P31249 RNU6-529P-201ENST00000363383 104 ntBASIC2.56□□□□□ -2
HOXD3P31249 Y_RNA.222-201ENST00000364264 102 ntBASIC2.56□□□□□ -2
HOXD3P31249 RNU4-9P-201ENST00000364951 139 ntBASIC2.56□□□□□ -2
HOXD3P31249 RNU6-806P-201ENST00000365147 105 ntBASIC2.56□□□□□ -2
HOXD3P31249 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.56□□□□□ -2
HOXD3P31249 SNORA51.11-201ENST00000384442 131 ntBASIC2.56□□□□□ -2
HOXD3P31249 RNU6-750P-201ENST00000390946 107 ntBASIC2.56□□□□□ -2
HOXD3P31249 UBA52P6-201ENST00000399822 382 ntBASIC2.56□□□□□ -2
HOXD3P31249 AL357075.1-201ENST00000404107 726 ntBASIC2.56□□□□□ -2
HOXD3P31249 MIR1252-201ENST00000408861 65 ntBASIC2.56□□□□□ -2
HOXD3P31249 AL356968.1-201ENST00000416622 474 ntBASIC2.56□□□□□ -2
HOXD3P31249 AC114482.1-201ENST00000418010 247 ntBASIC2.56□□□□□ -2
HOXD3P31249 AL445305.1-201ENST00000432577 575 ntBASIC2.56□□□□□ -2
HOXD3P31249 AL353705.1-201ENST00000433468 480 ntBASIC2.56□□□□□ -2
HOXD3P31249 RPL23AP58-201ENST00000440453 469 ntBASIC2.56□□□□□ -2
HOXD3P31249 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.56□□□□□ -2
HOXD3P31249 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.56□□□□□ -2
HOXD3P31249 Z75741.1-201ENST00000446793 314 ntBASIC2.56□□□□□ -2
HOXD3P31249 snoU13.6-201ENST00000458785 104 ntBASIC2.56□□□□□ -2
HOXD3P31249 CENPBD1P1-201ENST00000464061 469 ntBASIC2.56□□□□□ -2
HOXD3P31249 AC087477.1-201ENST00000465747 340 ntBASIC2.56□□□□□ -2
HOXD3P31249 RPS26P21-201ENST00000475397 348 ntBASIC2.56□□□□□ -2
HOXD3P31249 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.56□□□□□ -2
HOXD3P31249 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.56□□□□□ -2
HOXD3P31249 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.56□□□□□ -2
HOXD3P31249 RNU6-397P-201ENST00000516226 104 ntBASIC2.56□□□□□ -2
HOXD3P31249 CKS1BP7-201ENST00000522230 235 ntBASIC2.56□□□□□ -2
HOXD3P31249 AC007375.1-201ENST00000554513 578 ntBASIC2.56□□□□□ -2
HOXD3P31249 TGIF1P1-201ENST00000558095 802 ntBASIC2.56□□□□□ -2
HOXD3P31249 7SK.7-201ENST00000603504 247 ntBASIC2.56□□□□□ -2
HOXD3P31249 AC100812.1-201ENST00000607622 580 ntBASIC2.56□□□□□ -2
HOXD3P31249 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.56□□□□□ -2
HOXD3P31249 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.56□□□□□ -2
HOXD3P31249 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.56□□□□□ -2
HOXD3P31249 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.56□□□□□ -2
HOXD3P31249 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
HOXD3P31249 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.55□□□□□ -2
HOXD3P31249 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
HOXD3P31249 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC2.55□□□□□ -2
HOXD3P31249 RNU5B-2P-201ENST00000363036 113 ntBASIC2.55□□□□□ -2
HOXD3P31249 Y_RNA.176-201ENST00000363815 109 ntBASIC2.55□□□□□ -2
HOXD3P31249 Y_RNA.193-201ENST00000363979 102 ntBASIC2.55□□□□□ -2
HOXD3P31249 RNU6-1141P-201ENST00000364520 107 ntBASIC2.55□□□□□ -2
HOXD3P31249 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.55□□□□□ -2
HOXD3P31249 Y_RNA.574-201ENST00000384766 95 ntBASIC2.55□□□□□ -2
HOXD3P31249 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 126.9 ms