Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD9P28356 RPL30P10-201ENST00000488148 337 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD9P28356 RNA5SP356-201ENST00000515972 94 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 RNU6-911P-201ENST00000516523 104 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 RNU6-794P-201ENST00000517261 64 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.94□□□□□ -1.94
HOXD9P28356 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD9P28356 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXD9P28356 LINC00933-203ENST00000559812 219 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 AC004584.2-201ENST00000570407 410 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 MIR4782-201ENST00000577987 79 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD9P28356 ELOCP29-201ENST00000588193 334 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 VN1R91P-201ENST00000594377 169 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 AC009318.2-201ENST00000610917 651 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 HMGB1P24-202ENST00000615653 685 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 MIR6852-201ENST00000621699 66 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 U6.99-201ENST00000637524 83 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD9P28356 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXD9P28356 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
HOXD9P28356 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD9P28356 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD9P28356 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD9P28356 AC091564.4-201ENST00000533934 2194 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD9P28356 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXD9P28356 RNU6-227P-201ENST00000362865 103 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 RNU6-78P-201ENST00000362897 107 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 Y_RNA.276-201ENST00000364732 109 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 SNORA63.7-201ENST00000365579 123 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 MIR518D-201ENST00000385014 87 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
HOXD9P28356 EI24P2-201ENST00000397776 1076 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 U3.37-201ENST00000408528 213 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 MIR1289-1-201ENST00000408836 144 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD9P28356 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.93□□□□□ -1.94
HOXD9P28356 HMGB3P8-201ENST00000449709 577 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD9P28356 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD9P28356 AC079354.2-201ENST00000453523 154 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD9P28356 snoU109.2-201ENST00000459316 135 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 RNU6-1183P-201ENST00000517054 60 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 Y_RNA.715-201ENST00000517082 110 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 AC131281.1-201ENST00000522984 164 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 AC040926.1-201ENST00000530195 238 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 AC079600.2-201ENST00000550076 130 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXD9P28356 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD9P28356 AC107871.2-201ENST00000612894 502 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD9P28356 AC090617.7-201ENST00000623952 126 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD9P28356 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD9P28356 MAPK10-362ENST00000641864 4484 ntBASIC2.93□□□□□ -1.94
HOXD9P28356 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD9P28356 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD9P28356 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXD9P28356 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD9P28356 RNA5SP139-201ENST00000364340 117 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 RNU6-336P-201ENST00000364891 107 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 RNU6-26P-201ENST00000383985 107 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 Y_RNA.526-201ENST00000384572 110 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 RPL26P27-201ENST00000414397 437 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 AC007098.1-201ENST00000420122 367 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD9P28356 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD9P28356 CBX3P6-201ENST00000430257 527 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 AC087499.2-201ENST00000432861 149 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD9P28356 AC098831.1-201ENST00000440661 216 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXD9P28356 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD9P28356 RNU7-23P-201ENST00000459465 62 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 RPL22P13-201ENST00000493291 347 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD9P28356 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXD9P28356 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD9P28356 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD9P28356 Y_RNA.668-201ENST00000516233 93 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXD9P28356 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXD9P28356 MYL12BP1-201ENST00000569826 507 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD9P28356 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.92□□□□□ -1.94
HOXD9P28356 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
HOXD9P28356 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
HOXD9P28356 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.91□□□□□ -1.94
HOXD9P28356 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXD9P28356 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXD9P28356 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
HOXD9P28356 RNU1-35P-201ENST00000362782 153 ntBASIC2.91□□□□□ -1.94
HOXD9P28356 RNU6-238P-201ENST00000363313 106 ntBASIC2.91□□□□□ -1.94
HOXD9P28356 Y_RNA.551-201ENST00000384661 102 ntBASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms