Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 EIF4A1P12-201ENST00000551910 141 ntBASIC3.1□□□□□ -1.91
HMGB1P09429 MIR4299-201ENST00000577899 72 ntBASIC3.1□□□□□ -1.91
HMGB1P09429 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.1□□□□□ -1.91
HMGB1P09429 SNORD53-201ENST00000579969 78 ntBASIC3.1□□□□□ -1.91
HMGB1P09429 MIR5092-201ENST00000583139 88 ntBASIC3.1□□□□□ -1.91
HMGB1P09429 CYP2C61P-201ENST00000604072 290 ntBASIC3.1□□□□□ -1.91
HMGB1P09429 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.1□□□□□ -1.91
HMGB1P09429 AC009487.4-201ENST00000624969 3585 ntBASIC3.1□□□□□ -1.91
HMGB1P09429 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.09□□□□□ -1.91
HMGB1P09429 RNU6-438P-201ENST00000365561 103 ntBASIC3.09□□□□□ -1.91
HMGB1P09429 RNU6-160P-201ENST00000384591 107 ntBASIC3.09□□□□□ -1.91
HMGB1P09429 RNU4-26P-201ENST00000410270 107 ntBASIC3.09□□□□□ -1.91
HMGB1P09429 RNU2-41P-201ENST00000410991 178 ntBASIC3.09□□□□□ -1.91
HMGB1P09429 USP9YP27-201ENST00000418455 438 ntBASIC3.09□□□□□ -1.91
HMGB1P09429 HMGN2P19-201ENST00000425149 265 ntBASIC3.09□□□□□ -1.91
HMGB1P09429 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.09□□□□□ -1.91
HMGB1P09429 AC096725.1-201ENST00000514266 313 ntBASIC3.09□□□□□ -1.91
HMGB1P09429 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.09□□□□□ -1.91
HMGB1P09429 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
HMGB1P09429 RNU6-859P-201ENST00000362728 107 ntBASIC3.08□□□□□ -1.92
HMGB1P09429 AL158823.1-201ENST00000418441 478 ntBASIC3.08□□□□□ -1.92
HMGB1P09429 CR769767.1-201ENST00000436337 346 ntBASIC3.08□□□□□ -1.92
HMGB1P09429 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.08□□□□□ -1.92
HMGB1P09429 SRIP1-201ENST00000489235 288 ntBASIC3.08□□□□□ -1.92
HMGB1P09429 RN7SKP132-201ENST00000516001 208 ntBASIC3.08□□□□□ -1.92
HMGB1P09429 RNU5F-4P-201ENST00000516581 114 ntBASIC3.08□□□□□ -1.92
HMGB1P09429 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.08□□□□□ -1.92
HMGB1P09429 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.08□□□□□ -1.92
HMGB1P09429 AC074050.1-201ENST00000563247 211 ntBASIC3.08□□□□□ -1.92
HMGB1P09429 AC090517.1-201ENST00000569307 266 ntBASIC3.08□□□□□ -1.92
HMGB1P09429 AC005034.5-201ENST00000604219 466 ntBASIC3.08□□□□□ -1.92
HMGB1P09429 AL627230.6-201ENST00000611129 280 ntBASIC3.08□□□□□ -1.92
HMGB1P09429 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.08□□□□□ -1.92
HMGB1P09429 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
HMGB1P09429 Y_RNA.167-201ENST00000363735 109 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 RNU6-933P-201ENST00000384424 107 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 MIR483-201ENST00000385070 76 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 RNU6-1093P-201ENST00000391194 107 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 USP9YP20-201ENST00000419224 558 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 EIF1AXP1-201ENST00000419267 435 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 FTH1P25-201ENST00000447665 469 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 snoU13.6-201ENST00000458785 104 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 RNA5SP233-201ENST00000459153 113 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 AC114801.2-201ENST00000503825 781 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.07□□□□□ -1.92
HMGB1P09429 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC3.07□□□□□ -1.92
HMGB1P09429 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.07□□□□□ -1.92
HMGB1P09429 GTF3AP2-201ENST00000557014 266 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 AC008749.1-201ENST00000597650 306 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.07□□□□□ -1.92
HMGB1P09429 AL773524.1-201ENST00000614065 229 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 AL590240.4-201ENST00000616908 390 ntBASIC3.07□□□□□ -1.92
HMGB1P09429 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.07□□□□□ -1.92
HMGB1P09429 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
HMGB1P09429 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.07□□□□□ -1.92
HMGB1P09429 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.07□□□□□ -1.92
HMGB1P09429 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HMGB1P09429 Y_RNA.123-201ENST00000363338 102 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 RNU6-522P-201ENST00000364497 107 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 MIR521-1-201ENST00000384902 87 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 Y_RNA.615-201ENST00000410769 117 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 RNU6-325P-201ENST00000411132 105 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.06□□□□□ -1.92
HMGB1P09429 ATP6V0E1P3-201ENST00000420036 246 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 COTL1P1-201ENST00000422309 375 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.06□□□□□ -1.92
HMGB1P09429 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.06□□□□□ -1.92
HMGB1P09429 MTND2P29-201ENST00000438595 412 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 SNRPEP8-201ENST00000442866 260 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.06□□□□□ -1.92
HMGB1P09429 RPL23AP42-201ENST00000471152 471 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HMGB1P09429 SCOCP1-201ENST00000554676 349 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.06□□□□□ -1.92
HMGB1P09429 LARP7P3-201ENST00000579888 337 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 BNIP3P25-201ENST00000596023 559 ntBASIC3.06□□□□□ -1.92
HMGB1P09429 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.06□□□□□ -1.92
HMGB1P09429 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HMGB1P09429 AC233981.2-201ENST00000611524 1614 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 AC121333.1-201ENST00000567488 2709 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.05□□□□□ -1.92
HMGB1P09429 Y_RNA.38-201ENST00000362617 102 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 RNU6-1252P-201ENST00000363054 104 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 RNU6-623P-201ENST00000363143 105 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 RNU6-1090P-201ENST00000364065 94 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 Y_RNA.318-201ENST00000365131 97 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 RNU6-908P-201ENST00000410160 94 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.05□□□□□ -1.92
HMGB1P09429 AC063976.3-201ENST00000426849 329 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 SNORD109B-201ENST00000458961 67 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 SNORD109A-201ENST00000459128 67 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 RNU7-14P-201ENST00000459331 62 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 RPS29P27-201ENST00000463711 170 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.05□□□□□ -1.92
HMGB1P09429 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.05□□□□□ -1.92
HMGB1P09429 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 AC090136.1-201ENST00000520009 240 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 AC243972.3-201ENST00000539655 198 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 AC026371.1-201ENST00000551867 419 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms