Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
SDCBPO00560 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC0.71□□□□□ -2.3
SDCBPO00560 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.71□□□□□ -2.3
SDCBPO00560 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC0.71□□□□□ -2.3
SDCBPO00560 AC243964.1-201ENST00000441814 261 ntBASIC0.71□□□□□ -2.3
SDCBPO00560 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC0.71□□□□□ -2.3
SDCBPO00560 AC006026.2-201ENST00000457376 180 ntBASIC0.71□□□□□ -2.3
SDCBPO00560 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.71□□□□□ -2.3
SDCBPO00560 AC005741.1-201ENST00000511094 432 ntBASIC0.71□□□□□ -2.3
SDCBPO00560 MTND3P5-201ENST00000512798 333 ntBASIC0.71□□□□□ -2.3
SDCBPO00560 SNORA31.16-201ENST00000516773 139 ntBASIC0.71□□□□□ -2.3
SDCBPO00560 AP003181.2-201ENST00000528941 181 ntBASIC0.71□□□□□ -2.3
SDCBPO00560 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.71□□□□□ -2.3
SDCBPO00560 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.71□□□□□ -2.3
SDCBPO00560 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC0.71□□□□□ -2.3
SDCBPO00560 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC0.71□□□□□ -2.3
SDCBPO00560 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC0.71□□□□□ -2.3
SDCBPO00560 AL139286.2-201ENST00000606838 396 ntBASIC0.71□□□□□ -2.3
SDCBPO00560 AL359740.1-201ENST00000624340 592 ntBASIC0.71□□□□□ -2.3
SDCBPO00560 SNORD98-201ENST00000636377 67 ntBASIC0.71□□□□□ -2.3
SDCBPO00560 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.71□□□□□ -2.3
SDCBPO00560 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC0.7□□□□□ -2.3
SDCBPO00560 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
SDCBPO00560 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.7□□□□□ -2.3
SDCBPO00560 Y_RNA.22-201ENST00000362492 102 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 RNU6-105P-201ENST00000363909 104 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 SNORA63D-201ENST00000364359 132 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 RNU6-1080P-201ENST00000383982 107 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 RNU6-83P-201ENST00000384568 112 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 RNU6-331P-201ENST00000384724 107 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 MIR146A-201ENST00000385201 99 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 MTCYBP36-201ENST00000404146 440 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 RN7SKP61-201ENST00000410642 295 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 MTCO3P41-201ENST00000414801 328 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC0.7□□□□□ -2.3
SDCBPO00560 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.7□□□□□ -2.3
SDCBPO00560 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.7□□□□□ -2.3
SDCBPO00560 AC103851.1-201ENST00000506833 274 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC0.7□□□□□ -2.3
SDCBPO00560 SUMO2P18-201ENST00000518873 252 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC0.7□□□□□ -2.3
SDCBPO00560 AL512310.8-201ENST00000550183 120 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 AC087883.1-201ENST00000551882 391 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 MIR4698-201ENST00000577795 80 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.7□□□□□ -2.3
SDCBPO00560 AP005136.1-201ENST00000579765 429 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 AC008752.3-201ENST00000588113 712 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 NIFKP6-201ENST00000598115 845 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 MIR3976-201ENST00000606807 139 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 AL365434.2-201ENST00000607979 234 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 AL157392.4-201ENST00000609756 345 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 MIR6857-201ENST00000613267 93 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 AL607023.1-201ENST00000620045 248 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 AL133216.2-202ENST00000634512 349 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 U4.7-201ENST00000638126 106 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 AC233981.2-201ENST00000611524 1614 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 AC010615.1-201ENST00000594254 1764 ntBASIC0.7□□□□□ -2.3
SDCBPO00560 SNORD33-201ENST00000362761 85 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 RNU6-527P-201ENST00000363425 104 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 RNU6-61P-201ENST00000365528 109 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 RNU6-692P-201ENST00000384496 107 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 RNU6-636P-201ENST00000384598 107 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.69□□□□□ -2.3
SDCBPO00560 MTCO2P21-201ENST00000419780 677 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 CST2P1-201ENST00000425770 87 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC0.69□□□□□ -2.3
SDCBPO00560 AL591043.1-201ENST00000432461 424 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 AL603825.1-201ENST00000438481 80 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 RPL22P17-201ENST00000438729 315 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC0.69□□□□□ -2.3
SDCBPO00560 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.69□□□□□ -2.3
SDCBPO00560 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.69□□□□□ -2.3
SDCBPO00560 AC114982.1-201ENST00000469402 321 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 RNU6-1053P-201ENST00000515930 101 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 RNU5A-4P-201ENST00000516588 111 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.69□□□□□ -2.3
SDCBPO00560 IGHVII-53-1-201ENST00000519538 255 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 ZNF321P-202ENST00000550843 495 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC0.69□□□□□ -2.3
SDCBPO00560 VN1R107P-201ENST00000601784 209 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 MZT1P2-201ENST00000604387 248 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 FAM71BP1-201ENST00000604431 523 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 AC016727.1-205ENST00000605437 569 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 RNU4-5P-201ENST00000607255 135 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
SDCBPO00560 AC106800.4-201ENST00000614905 153 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 AC136475.10-201ENST00000620253 385 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC0.69□□□□□ -2.3
SDCBPO00560 Z69720.2-201ENST00000624755 279 ntBASIC0.69□□□□□ -2.3
SDCBPO00560 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.69□□□□□ -2.3
SDCBPO00560 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC0.68□□□□□ -2.3
SDCBPO00560 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
SDCBPO00560 SNORA18.2-201ENST00000383865 132 ntBASIC0.68□□□□□ -2.3
SDCBPO00560 SNORA32.2-201ENST00000384049 122 ntBASIC0.68□□□□□ -2.3
SDCBPO00560 RNU6-43P-201ENST00000384302 107 ntBASIC0.68□□□□□ -2.3
SDCBPO00560 AL117342.1-201ENST00000404861 406 ntBASIC0.68□□□□□ -2.3
SDCBPO00560 MTCYBP2-201ENST00000407745 171 ntBASIC0.68□□□□□ -2.3
SDCBPO00560 RNA5SP201-201ENST00000410316 124 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms