Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RN7SKP158-201ENST00000410453 326 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 Y_RNA.615-201ENST00000410769 117 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 ARL5AP1-201ENST00000418991 388 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 MRPS10P2-201ENST00000431226 381 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AL139415.2-201ENST00000431968 163 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AC243964.1-201ENST00000441814 261 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 USP9YP8-201ENST00000441913 500 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 CYP2C59P-201ENST00000457790 269 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 TRBV12-1-201ENST00000479785 344 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AC083904.1-201ENST00000487828 231 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 ANXA2P1-201ENST00000505539 926 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 SNORA19.2-201ENST00000516013 114 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 RNU6-718P-201ENST00000516166 105 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AP005597.4-201ENST00000526762 229 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AC121758.2-201ENST00000553271 193 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AC104458.1-201ENST00000608243 463 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 MIR6895-201ENST00000613497 78 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 uc_338.15-201ENST00000615470 191 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AL159153.1-201ENST00000619688 317 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AC027514.1-201ENST00000588561 1603 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 RNU6-692P-201ENST00000384496 107 ntBASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 MIR95-201ENST00000385072 81 ntBASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 RNU6-293P-201ENST00000411259 106 ntBASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 SNRPEP10-201ENST00000420249 274 ntBASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 AL121594.1-201ENST00000475906 575 ntBASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 AC068781.1-201ENST00000488231 618 ntBASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 RNU6-323P-201ENST00000521915 107 ntBASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 CBX3P7-201ENST00000532876 502 ntBASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 AC087241.2-201ENST00000535801 324 ntBASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 AL357078.3-201ENST00000607528 618 ntBASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 FAM157A-202ENST00000615155 405 ntBASIC2.38□□□□□ -2.03
CPSF3Q9UKF6 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 RNU6-212P-201ENST00000362642 104 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 MIR544A-201ENST00000384855 91 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 EIF4E2P1-201ENST00000393781 255 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 SNORD23.1-201ENST00000408212 104 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 RN7SKP192-201ENST00000411291 327 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AIMP1P2-201ENST00000425294 312 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 IPO7P1-201ENST00000442031 636 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 snoU13.14-201ENST00000459372 104 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 RPS29P25-201ENST00000481709 171 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AK3P2-201ENST00000507976 429 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 RNU2-53P-201ENST00000516257 147 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 SCARNA16.3-201ENST00000516595 184 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AC118273.2-201ENST00000532092 465 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AC025423.5-201ENST00000550230 219 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 PRELID2P1-201ENST00000552837 301 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AC093249.1-201ENST00000567049 203 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 BNIP3P16-201ENST00000589779 534 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 RPL30P11-203ENST00000598995 310 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AC146944.4-201ENST00000602697 718 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AC107304.1-201ENST00000604229 296 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 CTHRC1P1-201ENST00000605383 469 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AL161423.1-201ENST00000613700 262 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AC012640.5-201ENST00000623897 319 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 AC241585.2-209ENST00000638217 143 ntBASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.37□□□□□ -2.03
CPSF3Q9UKF6 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AC002543.1-201ENST00000299783 1954 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 Y_RNA.295-201ENST00000364918 102 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 RNU6-1032P-201ENST00000384100 107 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 SNORA70B-201ENST00000384210 135 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 SNORA48.3-201ENST00000391081 134 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 RNU6-332P-201ENST00000391193 108 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 RNU4-26P-201ENST00000410270 107 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 FCF1P9-201ENST00000412546 282 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 DPH3P2-201ENST00000422618 250 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AC096638.1-201ENST00000444678 216 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 RPL39P29-201ENST00000447779 157 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AL353705.4-201ENST00000449661 238 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 206.1 ms