Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 RN7SKP58-201ENST00000411010 305 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 AL513477.1-202ENST00000417061 214 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 NUP35P1-201ENST00000422734 947 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 HMGN2P30-201ENST00000423237 256 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 MTCYBP9-201ENST00000431021 303 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.21□□□□□ -1.9
DKK3Q9UBP4 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.21□□□□□ -1.9
DKK3Q9UBP4 AC112492.4-201ENST00000456549 352 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 AC006026.2-201ENST00000457376 180 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 RPL27AP5-201ENST00000469428 449 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 AK3P2-201ENST00000507976 429 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 AC006445.2-201ENST00000510061 472 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.21□□□□□ -1.9
DKK3Q9UBP4 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.21□□□□□ -1.9
DKK3Q9UBP4 AC113195.1-201ENST00000579952 141 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 RPL23AP78-201ENST00000599928 470 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 AC024153.1-201ENST00000603103 365 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 AC087588.2-201ENST00000617667 426 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 AL138825.1-201ENST00000618587 192 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 MIR622-201ENST00000638396 96 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 FAM35BP-202ENST00000497389 3337 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
DKK3Q9UBP4 ZNF299P-201ENST00000406845 1804 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.21□□□□□ -1.9
DKK3Q9UBP4 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 RNU6-78P-201ENST00000362897 107 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 RNU6-595P-201ENST00000363944 107 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 RNU6-99P-201ENST00000364721 107 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 RNU6-1180P-201ENST00000364935 107 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 RNA5SP126-201ENST00000365092 109 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 MIR568-201ENST00000385036 95 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 RNU6-1156P-201ENST00000410365 100 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 Y_RNA.605-201ENST00000410577 105 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 HMGB3P2-201ENST00000411913 584 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 AC098831.1-201ENST00000440661 216 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 FO393415.2-201ENST00000480085 343 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 RNU6-612P-201ENST00000516909 102 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 RNU7-4P-201ENST00000516961 62 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 HSPE1P20-201ENST00000538133 289 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 MIR5701-3-201ENST00000578890 82 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 MIR5701-1-201ENST00000585138 82 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 AC020895.1-201ENST00000595362 272 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 SNORD58B-201ENST00000607313 66 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 AC013412.1-201ENST00000610687 192 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 uc_338.25-201ENST00000613756 156 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 MIR5701-2-201ENST00000615634 82 ntBASIC3.2□□□□□ -1.9
DKK3Q9UBP4 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
DKK3Q9UBP4 AC008669.1-201ENST00000565823 2178 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 Y_RNA.48-201ENST00000362710 103 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 RNA5SP374-201ENST00000362939 125 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 RNU6-428P-201ENST00000362942 107 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 RNU6-336P-201ENST00000364891 107 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 RNU6-1035P-201ENST00000384477 107 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 Y_RNA.557-201ENST00000384680 107 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 MIR521-1-201ENST00000384902 87 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 NDUFS5P4-201ENST00000412983 318 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.19□□□□□ -1.9
DKK3Q9UBP4 AL353997.1-201ENST00000432936 108 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.19□□□□□ -1.9
DKK3Q9UBP4 RPL37P4-201ENST00000448908 268 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
DKK3Q9UBP4 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.19□□□□□ -1.9
DKK3Q9UBP4 snoU109.2-201ENST00000459316 135 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 RPS29P27-201ENST00000463711 170 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 AIG1P1-201ENST00000503376 148 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 AC097462.2-201ENST00000504623 481 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.19□□□□□ -1.9
DKK3Q9UBP4 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.19□□□□□ -1.9
DKK3Q9UBP4 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.19□□□□□ -1.9
DKK3Q9UBP4 SNORA40.14-201ENST00000516543 86 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 H3F3AP1-201ENST00000559984 334 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.19□□□□□ -1.9
DKK3Q9UBP4 AC008739.2-201ENST00000597006 317 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 AL158827.2-201ENST00000602494 330 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 AC006023.1-201ENST00000603944 259 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 AC016727.2-201ENST00000603988 621 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 PRR13P7-201ENST00000605538 430 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 MIR7106-201ENST00000612419 65 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.19□□□□□ -1.9
DKK3Q9UBP4 AL691447.3-201ENST00000635020 330 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
DKK3Q9UBP4 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
DKK3Q9UBP4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.19□□□□□ -1.9
DKK3Q9UBP4 AC091812.1-201ENST00000432235 1948 ntBASIC3.19□□□□□ -1.9
DKK3Q9UBP4 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
DKK3Q9UBP4 MTND5P9-201ENST00000503854 1755 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 133.9 ms