Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SNORA43.4-201ENST00000629559 138 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 AC005592.1-201ENST00000566527 1640 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
TDP1Q9NUW8 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
TDP1Q9NUW8 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.25□□□□□ -1.89
TDP1Q9NUW8 RNU6-1141P-201ENST00000364520 107 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 SNORA71.1-201ENST00000364523 117 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 RNU4-42P-201ENST00000364738 142 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 MIR625-201ENST00000385047 85 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 MIR147B-201ENST00000390185 80 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.645-201ENST00000391229 102 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 RNU6-1140P-201ENST00000410517 106 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 RN7SKP220-201ENST00000410611 288 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 AC007098.1-201ENST00000420122 367 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 AL358453.1-201ENST00000422522 250 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 AC096644.2-201ENST00000429278 159 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.25□□□□□ -1.89
TDP1Q9NUW8 RPL39P29-201ENST00000447779 157 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.25□□□□□ -1.89
TDP1Q9NUW8 AL353752.1-201ENST00000454946 260 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.720-201ENST00000517166 92 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.25□□□□□ -1.89
TDP1Q9NUW8 AC136443.5-201ENST00000603741 370 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 RMST_8.1-201ENST00000610287 165 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 MIR4272-201ENST00000635924 64 ntBASIC3.25□□□□□ -1.89
TDP1Q9NUW8 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.25□□□□□ -1.89
TDP1Q9NUW8 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
TDP1Q9NUW8 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
TDP1Q9NUW8 MIR30E-201ENST00000362104 92 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 SNORA80A-201ENST00000363922 136 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 RNU6-1286P-201ENST00000383871 107 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.405-201ENST00000383979 100 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.451-201ENST00000384200 100 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.459-201ENST00000384251 102 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.524-201ENST00000384564 100 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.527-201ENST00000384573 102 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 RNU6-1222P-201ENST00000384615 107 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.561-201ENST00000384694 100 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 MIR767-201ENST00000390228 109 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 SNORA12.2-201ENST00000391040 156 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 SNORA11.2-201ENST00000408318 127 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 RNU6-985P-201ENST00000410182 104 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 Z82188.1-201ENST00000436709 154 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 RPL30P1-201ENST00000488676 339 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 AC104564.1-201ENST00000493028 407 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 RPS27P26-201ENST00000494583 239 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 GZMAP1-201ENST00000503054 631 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 RNU6-475P-201ENST00000516073 104 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 HSPE1P4-201ENST00000550617 308 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 AC104695.3-201ENST00000604052 296 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 AC087588.2-201ENST00000617667 426 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 AL162373.1-201ENST00000620433 407 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.24□□□□□ -1.89
TDP1Q9NUW8 AC138305.3-201ENST00000624988 240 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
TDP1Q9NUW8 AC091812.1-201ENST00000432235 1948 ntBASIC3.24□□□□□ -1.89
TDP1Q9NUW8 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 RNU6-874P-201ENST00000362390 105 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 RNU1-105P-201ENST00000363470 161 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 AP002088.1-201ENST00000382740 395 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 SNORA54-201ENST00000384281 123 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.504-201ENST00000384481 104 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 MTCYBP2-201ENST00000407745 171 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 AL353705.4-201ENST00000449661 238 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 MTND5P22-201ENST00000458380 195 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 RNU7-169P-201ENST00000459456 61 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 RPS4XP22-201ENST00000480755 780 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 RPL23AP75-201ENST00000491601 451 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 RNU6-1046P-201ENST00000516538 107 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 AC104581.2-201ENST00000572227 430 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 AC010928.2-201ENST00000588017 287 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 7SK.7-201ENST00000603504 247 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 RPL23AP88-201ENST00000605759 454 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 RNU6-91P-201ENST00000607774 107 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 SCARNA4-201ENST00000629045 128 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 AL137790.1-201ENST00000634283 177 ntBASIC3.23□□□□□ -1.89
TDP1Q9NUW8 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.23□□□□□ -1.89
TDP1Q9NUW8 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
TDP1Q9NUW8 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.22□□□□□ -1.89
TDP1Q9NUW8 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.22□□□□□ -1.89
TDP1Q9NUW8 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
TDP1Q9NUW8 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms