Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RNU6-45P-201ENST00000384471 107 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 MTCYBP2-201ENST00000407745 171 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 TOMM22P6-201ENST00000465035 409 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 AC074344.1-201ENST00000512823 224 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 RNU6-377P-201ENST00000515965 102 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 SCARNA24.1-201ENST00000516465 137 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 ZNF321P-202ENST00000550843 495 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 MIR3937-201ENST00000580135 106 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 MTCO2P2-201ENST00000591258 225 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 AL590229.1-201ENST00000603497 542 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 AC083806.3-201ENST00000614016 455 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 AL590808.1-201ENST00000618696 141 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 AC010615.1-201ENST00000594254 1764 ntBASIC1.1□□□□□ -2.23
VCX3AQ9NNX9 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 SNORD113-6-201ENST00000363345 75 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 RNU4-13P-201ENST00000364019 141 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 RNU6-1141P-201ENST00000364520 107 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 RNU6-60P-201ENST00000364792 103 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 Y_RNA.324-201ENST00000365165 102 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 SNORD115-7-201ENST00000365306 82 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 MIR513B-201ENST00000385136 84 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 SNORA11.1-201ENST00000408133 129 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 RNU2-7P-201ENST00000410794 178 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 RNA5SP508-201ENST00000411327 119 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 AC244670.1-201ENST00000436879 112 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 AC116562.3-201ENST00000506136 177 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 AC068587.5-201ENST00000528506 175 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 CYP3A52P-201ENST00000563326 91 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 AC015688.6-201ENST00000577737 104 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 MIR4648-201ENST00000580107 72 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 MIR4295-201ENST00000585286 85 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 AC069114.2-201ENST00000604699 304 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 AL451064.1-201ENST00000607718 471 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 AC027807.2-201ENST00000616099 408 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 AC009878.1-201ENST00000621819 340 ntBASIC1.09□□□□□ -2.23
VCX3AQ9NNX9 RNU6-428P-201ENST00000362942 107 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 RNU6-1303P-201ENST00000364841 107 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 RNU6-336P-201ENST00000364891 107 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 MIR513A1-201ENST00000385138 129 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 MIR618-201ENST00000385287 98 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 RNA5SP201-201ENST00000410316 124 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 RPL23AP36-201ENST00000413895 458 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 OR6C66P-201ENST00000414917 930 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 SSR1P2-201ENST00000415208 787 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 EBAG9P1-201ENST00000418955 543 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 GAPDHP17-201ENST00000449858 1001 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 AC098799.1-201ENST00000504752 800 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 RNU6-1098P-201ENST00000516772 96 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 AC009159.2-201ENST00000617603 606 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 AC136475.10-201ENST00000620253 385 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 AC241585.2-209ENST00000638217 143 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 AC099654.13-201ENST00000639774 207 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 AL159152.1-201ENST00000635019 2587 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.08□□□□□ -2.24
VCX3AQ9NNX9 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 RNU6-387P-201ENST00000411331 105 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 FTH1P12-201ENST00000432137 551 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 AL512286.1-201ENST00000439244 400 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 AC004854.1-201ENST00000440356 349 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 ATP5J2P3-201ENST00000451550 258 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 Y_RNA.672-201ENST00000516289 104 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 AP003033.1-201ENST00000527244 415 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 AC084364.2-201ENST00000546924 395 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 AC021231.3-201ENST00000558497 370 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 MIR4435-1-201ENST00000582552 80 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 AC005771.1-201ENST00000585581 349 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 MIR3976-201ENST00000606807 139 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 AC007671.2-201ENST00000637344 619 ntBASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
VCX3AQ9NNX9 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 SNORD33-201ENST00000362761 85 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 Y_RNA.255-201ENST00000364581 97 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 SNORD32A-201ENST00000364805 84 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 SNORA25.8-201ENST00000364831 128 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 RNU6-331P-201ENST00000384724 107 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 RNU6-174P-201ENST00000410406 106 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms