Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 MIR1254-2-201ENST00000579553 63 ntBASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 AC072026.1-201ENST00000605023 201 ntBASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 SNORA62.6-201ENST00000606322 83 ntBASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 AC104465.1-201ENST00000611365 139 ntBASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 AL121772.2-201ENST00000614331 297 ntBASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 AL590240.4-201ENST00000616908 390 ntBASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 AC006001.4-201ENST00000622243 395 ntBASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SEC61A2Q9H9S3 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 MFSD8-236ENST00000641509 4050 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 Y_RNA.331-201ENST00000365267 102 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 MIR554-201ENST00000384874 96 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 MTHFD2P2-201ENST00000407725 247 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 RPL26P27-201ENST00000414397 437 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 RPL23AP95-201ENST00000426806 265 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 MTCO1P5-201ENST00000433573 344 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 POLR2KP2-201ENST00000438155 177 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 AC007969.2-201ENST00000441891 191 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 AC010095.1-201ENST00000443543 144 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 Y_RNA.638-201ENST00000459374 113 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 COX6CP14-201ENST00000469580 174 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 AC078817.1-201ENST00000492623 435 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 SNORA40.9-201ENST00000515895 93 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 RNU6-581P-201ENST00000516214 105 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 RNU6-1282P-201ENST00000516735 96 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 AL357075.2-201ENST00000614906 189 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 AC039056.2-201ENST00000622261 511 ntBASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SEC61A2Q9H9S3 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AL359854.1-201ENST00000614203 1594 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 MIR410-201ENST00000362222 80 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 Y_RNA.383-201ENST00000383855 97 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 RNU6-1145P-201ENST00000384246 107 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 RNU6-804P-201ENST00000384286 107 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 VDAC1P3-201ENST00000434069 851 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 TMSB4XP3-201ENST00000445144 114 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 HMGB3P8-201ENST00000449709 577 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 SNORA84-201ENST00000459229 133 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AC091021.1-201ENST00000468051 388 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 RPS29P26-201ENST00000477483 171 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AC078918.1-201ENST00000498515 228 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AC097462.2-201ENST00000504623 481 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 MTND5P41-201ENST00000517498 206 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AC012468.1-201ENST00000604888 430 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AC005828.6-201ENST00000606610 232 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 MIR6134-201ENST00000617606 109 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 SRP72P2-201ENST00000344851 1979 ntBASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
SEC61A2Q9H9S3 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SEC61A2Q9H9S3 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SEC61A2Q9H9S3 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
SEC61A2Q9H9S3 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
SEC61A2Q9H9S3 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SEC61A2Q9H9S3 MAPK10-372ENST00000641954 3413 ntBASIC3.29□□□□□ -1.88
SEC61A2Q9H9S3 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.29□□□□□ -1.88
SEC61A2Q9H9S3 Y_RNA.82-201ENST00000363000 102 ntBASIC3.29□□□□□ -1.88
SEC61A2Q9H9S3 Y_RNA.92-201ENST00000363043 102 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 170 ms