Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC1.2□□□□□ -2.22
USP42Q9H9J4 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC1.2□□□□□ -2.22
USP42Q9H9J4 AL122001.1-201ENST00000457027 370 ntBASIC1.2□□□□□ -2.22
USP42Q9H9J4 snoU13.14-201ENST00000459372 104 ntBASIC1.2□□□□□ -2.22
USP42Q9H9J4 AC130509.1-201ENST00000464158 433 ntBASIC1.2□□□□□ -2.22
USP42Q9H9J4 RPL31P58-201ENST00000469001 379 ntBASIC1.2□□□□□ -2.22
USP42Q9H9J4 RPL30P1-201ENST00000488676 339 ntBASIC1.2□□□□□ -2.22
USP42Q9H9J4 AC107934.1-201ENST00000522215 217 ntBASIC1.2□□□□□ -2.22
USP42Q9H9J4 MTATP6P15-201ENST00000527233 835 ntBASIC1.2□□□□□ -2.22
USP42Q9H9J4 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.2□□□□□ -2.22
USP42Q9H9J4 AC097478.2-201ENST00000610572 514 ntBASIC1.2□□□□□ -2.22
USP42Q9H9J4 AL359547.2-201ENST00000615810 418 ntBASIC1.2□□□□□ -2.22
USP42Q9H9J4 SCARNA4-202ENST00000625402 129 ntBASIC1.2□□□□□ -2.22
USP42Q9H9J4 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.2□□□□□ -2.22
USP42Q9H9J4 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.2□□□□□ -2.22
USP42Q9H9J4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
USP42Q9H9J4 RNU6-83P-201ENST00000384568 112 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 RNU6-636P-201ENST00000384598 107 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 RPL21P90-201ENST00000415692 466 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 RPL39P29-201ENST00000447779 157 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC1.19□□□□□ -2.22
USP42Q9H9J4 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.19□□□□□ -2.22
USP42Q9H9J4 SNORA43.2-201ENST00000516652 128 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.19□□□□□ -2.22
USP42Q9H9J4 AC105185.1-201ENST00000518705 535 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.19□□□□□ -2.22
USP42Q9H9J4 AP003034.1-201ENST00000534621 422 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 RRN3P3-201ENST00000549207 578 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 AC019288.1-201ENST00000557918 224 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 MIR3169-201ENST00000578032 83 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 MIR5094-201ENST00000578766 85 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 AL138889.2-201ENST00000603883 242 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 AC121334.2-201ENST00000605387 271 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 AL139022.2-201ENST00000606934 443 ntBASIC1.19□□□□□ -2.22
USP42Q9H9J4 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC1.19□□□□□ -2.22
USP42Q9H9J4 ZNF29P-201ENST00000225587 168 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 AL357139.1-201ENST00000407792 426 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC1.18□□□□□ -2.22
USP42Q9H9J4 MTND1P20-201ENST00000430341 950 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.18□□□□□ -2.22
USP42Q9H9J4 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.18□□□□□ -2.22
USP42Q9H9J4 WDR78-207ENST00000488333 613 ntTSL 3 BASIC1.18□□□□□ -2.22
USP42Q9H9J4 AC099513.1-201ENST00000490423 301 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 AC091951.3-201ENST00000504093 246 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.18□□□□□ -2.22
USP42Q9H9J4 AC011979.2-201ENST00000527568 352 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 CBX3P8-201ENST00000532412 525 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.18□□□□□ -2.22
USP42Q9H9J4 RPL21P5-201ENST00000554662 472 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC1.18□□□□□ -2.22
USP42Q9H9J4 HMGB1P33-201ENST00000563485 527 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 MIR548AC-201ENST00000585049 88 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 BNIP3P40-201ENST00000596017 556 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 AL022154.1-201ENST00000604698 785 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 AL121890.5-201ENST00000620848 304 ntBASIC1.18□□□□□ -2.22
USP42Q9H9J4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.18□□□□□ -2.22
USP42Q9H9J4 Y_RNA.97-201ENST00000363094 102 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 RNU6-931P-201ENST00000363850 107 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 RNU4-41P-201ENST00000364426 143 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.17□□□□□ -2.22
USP42Q9H9J4 MTCO2P21-201ENST00000419780 677 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC1.17□□□□□ -2.22
USP42Q9H9J4 RPL22P17-201ENST00000438729 315 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC1.17□□□□□ -2.22
USP42Q9H9J4 AL009048.1-201ENST00000450437 298 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.17□□□□□ -2.22
USP42Q9H9J4 AC116347.2-201ENST00000514912 523 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 RNU6-1003P-201ENST00000517099 105 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 AP003122.4-201ENST00000530980 758 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 ADI1P3-201ENST00000549509 470 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC1.17□□□□□ -2.22
USP42Q9H9J4 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.17□□□□□ -2.22
USP42Q9H9J4 MIR4509-3-201ENST00000578671 94 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 MIR3118-1-201ENST00000581787 76 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 MIR4509-2-201ENST00000583920 94 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 AC022022.2-201ENST00000602989 360 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 AL020996.3-201ENST00000606617 222 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 MIR4509-1-201ENST00000618224 94 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 AC026585.1-201ENST00000619582 524 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 AP000720.1-201ENST00000625091 483 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 ICE2P2-201ENST00000483823 2787 ntBASIC1.17□□□□□ -2.22
USP42Q9H9J4 RNY4P24-201ENST00000362735 96 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 SNORA25.8-201ENST00000364831 128 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 SNORD26-201ENST00000384147 75 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 RNU6-939P-201ENST00000384634 107 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 RNU11-5P-201ENST00000391216 129 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 BTF3L4P1-201ENST00000413813 468 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 AL353777.1-201ENST00000425552 326 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC1.16□□□□□ -2.22
USP42Q9H9J4 MTCO1P44-201ENST00000441935 243 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC1.16□□□□□ -2.22
USP42Q9H9J4 USP9YP17-201ENST00000444617 696 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 RNA5SP269-201ENST00000459032 137 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 AC087477.1-201ENST00000465747 340 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 RPS26P55-201ENST00000471178 356 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 RNU6-201P-201ENST00000517100 61 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 RNU6-902P-201ENST00000517212 91 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC1.16□□□□□ -2.22
USP42Q9H9J4 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms