Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 AC090897.2-201ENST00000581715 130 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 RPS15AP11-201ENST00000594193 385 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 AC078795.3-201ENST00000602913 472 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 RNU6-91P-201ENST00000607774 107 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 AC098657.3-201ENST00000620434 263 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 AC092608.2-201ENST00000624427 218 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 AC243829.7-201ENST00000633081 225 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 MIR7153-201ENST00000637758 57 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 RNU6-212P-201ENST00000362642 104 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 U3.13-201ENST00000364804 214 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 XGY1-201ENST00000381172 446 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 RNU6-842P-201ENST00000384269 107 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 RNU6-1222P-201ENST00000384615 107 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 MTCO3P10-201ENST00000455912 772 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 AC112771.1-201ENST00000463581 102 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 AP004217.1-201ENST00000480579 346 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 RPL22P13-201ENST00000493291 347 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 AC097473.1-201ENST00000508142 408 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 AC093303.1-201ENST00000514549 295 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 RNU6-264P-201ENST00000517134 104 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 HSPE1P4-201ENST00000550617 308 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 MIR4765-201ENST00000585007 77 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 HMGB1P24-202ENST00000615653 685 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 AC099654.7-201ENST00000635788 2127 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 IGHVIII-44-202ENST00000636235 289 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 MTND5P10-201ENST00000603719 1809 ntBASIC2.91□□□□□ -1.94
PAAF1Q9BRP4 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.9□□□□□ -1.94
PAAF1Q9BRP4 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
PAAF1Q9BRP4 Y_RNA.187-201ENST00000363918 113 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 Y_RNA.813-201ENST00000364639 102 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 RNU6-596P-201ENST00000365395 98 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 RNU6-1083P-201ENST00000384022 107 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 RNU6-622P-201ENST00000384272 103 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 AL591034.2-201ENST00000402839 359 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 MTND1P14-201ENST00000427400 950 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 RPS29P27-201ENST00000463711 170 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 AC027575.1-201ENST00000481064 460 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 SNORA25.11-201ENST00000515935 105 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 SCARNA16.2-201ENST00000516520 172 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 AL356157.2-201ENST00000605122 111 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 AC090971.5-201ENST00000621102 293 ntBASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
PAAF1Q9BRP4 MTND5P9-201ENST00000503854 1755 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 AC002543.1-201ENST00000299783 1954 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 Y_RNA.48-201ENST00000362710 103 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 RNU6-142P-201ENST00000384019 107 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 RNU6-301P-201ENST00000384277 107 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 RNU6-43P-201ENST00000384302 107 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 Y_RNA.504-201ENST00000384481 104 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 RNU6-174P-201ENST00000410406 106 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 AL451074.5-201ENST00000415894 435 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 BX276092.3-201ENST00000424182 230 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 AL031659.1-201ENST00000447075 539 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 ELOCP24-201ENST00000456370 334 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 RPS3P1-201ENST00000456781 192 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 RPS26P21-201ENST00000475397 348 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 AC104564.1-201ENST00000493028 407 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 SCARNA17.1-201ENST00000516211 143 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 SCARNA17.2-201ENST00000516334 143 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 RNA5SP384-201ENST00000516615 116 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 RPL23AP78-201ENST00000599928 470 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 AC004832.5-201ENST00000608677 401 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 AL359854.1-201ENST00000614203 1594 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 SCARNA17.4-201ENST00000614296 143 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 MTND5P19-201ENST00000424872 1794 ntBASIC2.89□□□□□ -1.95
PAAF1Q9BRP4 AL079305.1-201ENST00000623159 3008 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms