Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 U3.13-201ENST00000364804 214 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 RNU6-487P-201ENST00000365430 104 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 RNU6-43P-201ENST00000384302 107 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
NKX3-1Q99801 AL356432.1-201ENST00000405809 419 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 SNORA11.2-201ENST00000408318 127 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 MIR548F5-201ENST00000408421 86 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 RN7SKP32-201ENST00000410167 303 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 AC008267.5-201ENST00000424928 265 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 MTND3P9-201ENST00000429526 346 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 ARL5AP4-201ENST00000430731 512 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 RPS15AP10-201ENST00000432472 382 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 AL645568.3-201ENST00000433683 316 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 HMGB1P18-201ENST00000438801 619 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 MTND1P17-201ENST00000448961 204 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 RPS29P27-201ENST00000463711 170 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 AC090515.1-201ENST00000465295 476 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 MTND4P17-201ENST00000470444 350 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 AC018437.1-201ENST00000492214 406 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 MTND5P5-201ENST00000503764 376 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 RN7SKP132-201ENST00000516001 208 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 MIR4790-201ENST00000577799 79 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 CPDP1-201ENST00000579660 283 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 MIR3117-201ENST00000584034 78 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 UBE2V2P2-201ENST00000587677 504 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 AC009994.1-201ENST00000606889 253 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 AC024581.2-201ENST00000619986 252 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
NKX3-1Q99801 ZNF271P-202ENST00000465539 1970 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 RNU6-1010P-201ENST00000362757 107 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 Y_RNA.70-201ENST00000362886 110 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 SNORD32A-201ENST00000364805 84 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 Y_RNA.339-201ENST00000365325 102 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 RNU1-51P-201ENST00000365345 176 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 Y_RNA.473-201ENST00000384333 102 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 RNU6-220P-201ENST00000390919 107 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
NKX3-1Q99801 MIR548K-201ENST00000408406 116 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 RNA5SP181-201ENST00000410246 98 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 RNA5SP184-201ENST00000411071 108 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.22□□□□□ -2.05
NKX3-1Q99801 AC011816.1-201ENST00000441346 546 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.22□□□□□ -2.05
NKX3-1Q99801 SNORD109B-201ENST00000458961 67 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 SNORD109A-201ENST00000459128 67 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 AC140059.1-201ENST00000489238 361 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 PTP4A1P4-201ENST00000512479 322 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 RNU6-875P-201ENST00000516488 106 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.22□□□□□ -2.05
NKX3-1Q99801 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
NKX3-1Q99801 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.22□□□□□ -2.05
NKX3-1Q99801 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.22□□□□□ -2.05
NKX3-1Q99801 AP001836.1-201ENST00000604675 523 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 AL137847.3-201ENST00000611521 109 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 AL159153.1-201ENST00000619688 317 ntBASIC2.22□□□□□ -2.05
NKX3-1Q99801 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
NKX3-1Q99801 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.22□□□□□ -2.05
NKX3-1Q99801 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
NKX3-1Q99801 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
NKX3-1Q99801 RNU6-212P-201ENST00000362642 104 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 Y_RNA.166-201ENST00000363730 102 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 MIR186-201ENST00000384988 86 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 RNU2-23P-201ENST00000410545 195 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 RNU2-52P-201ENST00000410680 190 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 RNU4-14P-201ENST00000410858 122 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 RNA5SP21-201ENST00000410917 96 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.21□□□□□ -2.06
NKX3-1Q99801 EIF4EP4-201ENST00000424916 578 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.21□□□□□ -2.06
NKX3-1Q99801 Z82205.1-201ENST00000428456 297 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 MICF-203ENST00000432679 129 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.21□□□□□ -2.06
NKX3-1Q99801 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.21□□□□□ -2.06
NKX3-1Q99801 FTH1P25-201ENST00000447665 469 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 MTND5P20-201ENST00000448677 143 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 AC073901.1-201ENST00000462471 408 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.21□□□□□ -2.06
NKX3-1Q99801 MTCO1P29-201ENST00000496868 288 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 AC023141.11-201ENST00000508864 202 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 RPL23AP94-201ENST00000512518 302 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 SCARNA3-201ENST00000517097 143 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 AC105137.2-201ENST00000569073 466 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 MIR5092-201ENST00000583139 88 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 AC091135.1-201ENST00000585943 307 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.21□□□□□ -2.06
NKX3-1Q99801 VN1R107P-201ENST00000601784 209 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 AL049779.4-201ENST00000604500 156 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 AC096772.1-201ENST00000609146 564 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 AC104260.1-201ENST00000616660 539 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 TPTEP1-208ENST00000636884 213 ntBASIC2.21□□□□□ -2.06
NKX3-1Q99801 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 177.7 ms