Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
RPUSD4Q96CM3 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
RPUSD4Q96CM3 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 RNU6-428P-201ENST00000362942 107 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 RNU6-522P-201ENST00000364497 107 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 SNORA25B-201ENST00000365507 128 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 RNU6-1274P-201ENST00000384557 107 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 MIR544A-201ENST00000384855 91 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 RNA5SP219-201ENST00000390940 113 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 AL591034.2-201ENST00000402839 359 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 RN7SKP158-201ENST00000410453 326 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 MTCO1P20-201ENST00000425366 358 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 AC078809.1-201ENST00000427601 140 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 AL353752.1-201ENST00000454946 260 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 RPL30P12-201ENST00000474666 353 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 BNIP3P22-201ENST00000593399 556 ntBASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 FER-210ENST00000628534 558 ntTSL 5 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC1.68□□□□□ -2.14
RPUSD4Q96CM3 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 RNU6-212P-201ENST00000362642 104 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 RNU1-23P-201ENST00000363361 144 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 Y_RNA.231-201ENST00000364358 102 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 RNU6-293P-201ENST00000411259 106 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 AP000275.1-201ENST00000411943 390 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 CBX3P6-201ENST00000430257 527 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 AL133396.1-201ENST00000432048 687 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 AL121601.2-201ENST00000438019 707 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 MTND3P16-201ENST00000452205 344 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 RN7SL274P-201ENST00000492268 272 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 CKS1BP2-201ENST00000497342 240 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 MRPS17P9-201ENST00000511924 393 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 RNU5F-2P-201ENST00000516066 82 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 AC087854.1-201ENST00000519706 414 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 AC245505.1-201ENST00000556398 224 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 ZNF519P2-201ENST00000557032 169 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 MIR3136-201ENST00000583498 78 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 MIR5002-201ENST00000584713 97 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 RNU6-85P-201ENST00000605989 107 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 DISC2.1-201ENST00000612827 205 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 AL132822.1-201ENST00000617063 513 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 YWHAEP7-203ENST00000622054 312 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 AC241585.2-209ENST00000638217 143 ntBASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.67□□□□□ -2.14
RPUSD4Q96CM3 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 RNY3P3-201ENST00000363816 102 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 RNU4-66P-201ENST00000365199 138 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 RNU6-827P-201ENST00000365553 106 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 Y_RNA.378-201ENST00000365652 113 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 RNU6-142P-201ENST00000384019 107 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 RNU6-43P-201ENST00000384302 107 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 RNU6-692P-201ENST00000384496 107 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 EIF4E2P1-201ENST00000393781 255 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 NDUFB4P4-201ENST00000404822 243 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 RPS15AP10-201ENST00000432472 382 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 AC018634.1-201ENST00000437554 401 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 RPL21P99-201ENST00000480369 423 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 HMGB1P35-201ENST00000503360 598 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 RNU6-1281P-201ENST00000516223 105 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 AK6P1-201ENST00000540219 478 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 AC100830.2-201ENST00000581636 240 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 AC092747.3-201ENST00000603769 301 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 AP001836.1-201ENST00000604675 523 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 ELOCP5-201ENST00000604924 333 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 AC004492.1-201ENST00000607036 742 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 AC092807.2-201ENST00000609367 243 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 AC097372.5-201ENST00000623665 376 ntBASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.66□□□□□ -2.14
RPUSD4Q96CM3 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.65□□□□□ -2.14
RPUSD4Q96CM3 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.65□□□□□ -2.14
RPUSD4Q96CM3 AC092268.1-201ENST00000342691 405 ntBASIC1.65□□□□□ -2.15
RPUSD4Q96CM3 RNU6-483P-201ENST00000384088 108 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms