Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.81□□□□□ -2.12
SKA3Q8IX90 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.81□□□□□ -2.12
SKA3Q8IX90 RPL23AP7-203ENST00000449021 469 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 AC013470.1-201ENST00000453438 462 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.81□□□□□ -2.12
SKA3Q8IX90 TPTE2P5-203ENST00000458118 728 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.81□□□□□ -2.12
SKA3Q8IX90 RNU2-44P-201ENST00000516795 194 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 RNU6-835P-201ENST00000516974 104 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 IGKV3-31-201ENST00000523109 329 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.81□□□□□ -2.12
SKA3Q8IX90 CENPUP1-201ENST00000526649 1202 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 AL118558.2-201ENST00000556294 238 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.81□□□□□ -2.12
SKA3Q8IX90 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.81□□□□□ -2.12
SKA3Q8IX90 AC092747.3-201ENST00000603769 301 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.81□□□□□ -2.12
SKA3Q8IX90 AL159153.1-201ENST00000619688 317 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.8□□□□□ -2.12
SKA3Q8IX90 U8.2-201ENST00000363156 134 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 RNU6-827P-201ENST00000365553 106 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 RNU6-692P-201ENST00000384496 107 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 CBX3P9-201ENST00000402326 552 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 RNU6-293P-201ENST00000411259 106 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 RNA5SP270-201ENST00000411361 118 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 AC027124.2-201ENST00000428249 105 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 AC009238.1-201ENST00000442165 424 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 AC009237.6-201ENST00000446969 424 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 MTCO3P38-201ENST00000468910 766 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 AC019235.1-201ENST00000503847 207 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 AK3P2-201ENST00000507976 429 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 AC009646.1-201ENST00000510455 318 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 RNU6-189P-201ENST00000516120 101 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.8□□□□□ -2.12
SKA3Q8IX90 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.8□□□□□ -2.12
SKA3Q8IX90 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.8□□□□□ -2.12
SKA3Q8IX90 AL512360.1-201ENST00000555346 234 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 AC103996.1-201ENST00000555468 102 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.8□□□□□ -2.12
SKA3Q8IX90 BNIP3P16-201ENST00000589779 534 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 RNU6-85P-201ENST00000605989 107 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 AC092954.2-201ENST00000609103 430 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.8□□□□□ -2.12
SKA3Q8IX90 AC087241.4-201ENST00000612441 480 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 Y_RNA.783-201ENST00000613546 102 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.8□□□□□ -2.12
SKA3Q8IX90 AC015540.1-201ENST00000615828 501 ntBASIC1.8□□□□□ -2.12
SKA3Q8IX90 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.8□□□□□ -2.12
SKA3Q8IX90 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
SKA3Q8IX90 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC1.79□□□□□ -2.12
SKA3Q8IX90 AC131280.1-202ENST00000624067 4211 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 snoU2_19.1-201ENST00000362361 80 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 RNU6-623P-201ENST00000363143 105 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 RNA5SP160-201ENST00000364866 120 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 Y_RNA.372-201ENST00000365599 102 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 RNU6-1222P-201ENST00000384615 107 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 SNORD73A-201ENST00000386062 65 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
SKA3Q8IX90 RNU6-648P-201ENST00000410190 107 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 RN7SKP192-201ENST00000411291 327 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 POLHP1-201ENST00000411806 470 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 AL139156.1-201ENST00000412785 841 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.79□□□□□ -2.12
SKA3Q8IX90 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.79□□□□□ -2.12
SKA3Q8IX90 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.79□□□□□ -2.12
SKA3Q8IX90 AC243964.1-201ENST00000441814 261 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.79□□□□□ -2.12
SKA3Q8IX90 AL353752.1-201ENST00000454946 260 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 RNA5SP233-201ENST00000459153 113 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 RNU7-138P-201ENST00000459479 64 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 SNRPGP7-201ENST00000469016 106 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 SNORA4.4-201ENST00000515921 135 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 Y_RNA.704-201ENST00000516851 102 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 COPS8P3-201ENST00000526024 482 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 HMGB1P33-201ENST00000563485 527 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 MIR4648-201ENST00000580107 72 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 SDR42E1P4-201ENST00000620894 481 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.79□□□□□ -2.12
SKA3Q8IX90 AC241585.2-209ENST00000638217 143 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 AC099654.12-201ENST00000639868 649 ntBASIC1.79□□□□□ -2.12
SKA3Q8IX90 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
SKA3Q8IX90 RNU6-82P-201ENST00000363970 107 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 Y_RNA.378-201ENST00000365652 113 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SKA3Q8IX90 RNU6-38P-201ENST00000384085 107 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 MIR514A2-201ENST00000385131 88 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 MIR514A3-201ENST00000385132 88 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 MTCO3P41-201ENST00000414801 328 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.78□□□□□ -2.12
SKA3Q8IX90 TIMM9P3-201ENST00000428659 274 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 AL445646.1-201ENST00000431784 216 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.78□□□□□ -2.12
SKA3Q8IX90 SEPT14P3-201ENST00000439401 183 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 RPL32P28-201ENST00000443577 397 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.78□□□□□ -2.12
SKA3Q8IX90 AL732372.2-207ENST00000445840 183 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 SEPT14P2-201ENST00000453405 183 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 RNU6-333P-201ENST00000459117 107 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.78□□□□□ -2.12
SKA3Q8IX90 Y_RNA.654-201ENST00000497848 106 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 177.9 ms