Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MIR3609-201ENST00000582661 80 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 AC004467.1-201ENST00000615678 330 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 AF117829.1-206ENST00000621883 3802 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 AC112484.5-201ENST00000624189 228 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 RNA5SP196-201ENST00000625967 102 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 snoU18.1-201ENST00000629629 71 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 MIR3674-201ENST00000636576 68 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 MIR372-201ENST00000362225 67 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 Y_RNA.7-201ENST00000362352 102 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 Y_RNA.101-201ENST00000363154 102 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 RNU6-799P-201ENST00000363567 107 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 Y_RNA.343-201ENST00000365354 112 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 RNU6-1027P-201ENST00000383998 107 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 SNORA18.3-201ENST00000384122 132 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 RNU6-748P-201ENST00000384648 107 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 MIR3074-201ENST00000384885 81 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 RN7SKP53-201ENST00000411337 315 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AC083863.1-201ENST00000438811 231 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AC009237.7-201ENST00000447357 229 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AIG1P1-201ENST00000503376 148 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 RNU1-61P-201ENST00000516107 151 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 RNU6-155P-201ENST00000516347 100 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 SNORA31.16-201ENST00000516773 139 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 GNRHR2P1-201ENST00000555315 631 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AC105137.2-201ENST00000569073 466 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AC009127.3-201ENST00000570531 403 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 MIR3923-201ENST00000579521 83 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AC006380.1-201ENST00000603598 186 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AL078604.3-201ENST00000615580 211 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AC091932.3-201ENST00000624223 323 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 SNORD98-201ENST00000636377 67 ntBASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.78□□□□□ -1.8
UBE3DQ7Z6J8 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.78□□□□□ -1.81
UBE3DQ7Z6J8 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 AC010300.1-201ENST00000600671 5134 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 RNU6-270P-201ENST00000364131 105 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 RNU4-17P-201ENST00000365598 141 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 RNU6-1264P-201ENST00000383891 107 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 U3.26-201ENST00000391236 204 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 RPL21P65-201ENST00000406094 466 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 MIR1251-201ENST00000408552 70 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 RNA5SP475-201ENST00000410568 110 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 RNU6-1199P-201ENST00000411249 104 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 AC009963.1-201ENST00000417265 157 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 YPEL5P1-201ENST00000419731 367 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 AL161651.1-201ENST00000440882 223 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 RN7SL385P-201ENST00000468873 276 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 RNU6-928P-201ENST00000516876 104 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 RN7SKP289-201ENST00000517244 295 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 RNA5SP179-201ENST00000517284 121 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 PARP1P2-201ENST00000556806 195 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 AC091167.4-201ENST00000605079 184 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 AC023043.4-201ENST00000612081 449 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 AC004825.2-201ENST00000616634 455 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 AC092628.2-201ENST00000622492 339 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 AL034408.1-202ENST00000636088 415 ntBASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.77□□□□□ -1.81
UBE3DQ7Z6J8 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 AL133383.2-201ENST00000622958 2336 ntBASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 Y_RNA.75-201ENST00000362927 97 ntBASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 MIR208B-201ENST00000401172 77 ntBASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 NDUFS5P3-201ENST00000450668 321 ntBASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 RPS29P20-201ENST00000489592 171 ntBASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.76□□□□□ -1.81
UBE3DQ7Z6J8 AC027176.1-201ENST00000560204 514 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms