Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AP005639.2-201ENST00000527592 928 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 MTCO3P23-201ENST00000561363 289 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 AL158211.1-201ENST00000566763 763 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 AGGF1P4-201ENST00000568249 801 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 MIR3945-201ENST00000581853 98 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 AC008536.2-201ENST00000607284 349 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 MIR1248-201ENST00000629190 106 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 SNORA75-201ENST00000384158 137 ntBASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 BTF3L4P2-201ENST00000392798 346 ntBASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 RNU4-26P-201ENST00000410270 107 ntBASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 CBX3P6-201ENST00000430257 527 ntBASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 AC245102.2-201ENST00000448956 180 ntBASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 AC013470.1-201ENST00000453438 462 ntBASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 AC107393.1-201ENST00000512403 346 ntBASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 AC022880.1-201ENST00000534017 973 ntBASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 BNIP3P16-201ENST00000589779 534 ntBASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 AL078605.1-201ENST00000603529 500 ntBASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 AC091805.2-201ENST00000603848 235 ntBASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 AP001596.2-201ENST00000608410 312 ntBASIC1.96□□□□□ -2.1
CCDC40Q4G0X9 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 RNU6-266P-201ENST00000364225 107 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 RNU6-1164P-201ENST00000364428 107 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 RNU6-234P-201ENST00000365229 104 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 SNORA8-201ENST00000384574 139 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 MIR9-3-201ENST00000385084 90 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 RNA5SP212-201ENST00000391223 107 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 RNU6-903P-201ENST00000391270 109 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 MIR1261-201ENST00000408659 82 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 RPL31P63-201ENST00000422565 375 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 AL590556.1-201ENST00000423231 483 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 HMGN2P3-201ENST00000433603 273 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 HMGN2P5-201ENST00000436882 273 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 RNU6-956P-201ENST00000458868 103 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 SNRPGP7-201ENST00000469016 106 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 RPS29P11-201ENST00000496507 171 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 AC024614.2-201ENST00000577584 372 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 MIR3618-201ENST00000580330 88 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 MTATP6P3-201ENST00000581686 676 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 RSL24D1P11-201ENST00000591045 491 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 AC107304.1-201ENST00000604229 296 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 AC018889.1-201ENST00000605372 397 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 Z69908.1-201ENST00000622603 247 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 AC241585.2-209ENST00000638217 143 ntBASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC40Q4G0X9 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 RNU6-552P-201ENST00000362869 119 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 Y_RNA.399-201ENST00000383955 105 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 RNU6-43P-201ENST00000384302 107 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 RNA5SP465-201ENST00000391195 109 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 RN7SKP284-201ENST00000411002 343 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 AL117339.3-201ENST00000418733 162 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 MTND2P29-201ENST00000438595 412 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 SNRPFP3-201ENST00000457792 225 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 AC093259.1-201ENST00000509755 300 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 MTND3P5-201ENST00000512798 333 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 AL137161.1-201ENST00000532231 390 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 AC103987.3-201ENST00000582071 292 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 AL034555.1-201ENST00000604816 211 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 SNORD98-201ENST00000636377 67 ntBASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC40Q4G0X9 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 RNU4-15P-201ENST00000362613 141 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 MIR583-201ENST00000384846 75 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 MIR597-201ENST00000384968 97 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 AC068050.1-201ENST00000394891 380 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 RPS29P13-201ENST00000402041 169 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 AC010975.2-201ENST00000427781 588 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 CETN4P-201ENST00000432407 469 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 AL360221.1-201ENST00000445989 335 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 AL031274.1-201ENST00000450334 232 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 AC022447.4-201ENST00000504053 364 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms