Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.64□□□□□ -2.31
NUP98P52948 MIR4661-201ENST00000582720 75 ntBASIC0.64□□□□□ -2.31
NUP98P52948 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.64□□□□□ -2.31
NUP98P52948 AC092574.1-201ENST00000609771 420 ntBASIC0.64□□□□□ -2.31
NUP98P52948 AC130324.3-201ENST00000614165 542 ntBASIC0.64□□□□□ -2.31
NUP98P52948 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
NUP98P52948 MIR608-201ENST00000384820 100 ntBASIC0.63□□□□□ -2.31
NUP98P52948 MIR520A-201ENST00000384862 85 ntBASIC0.63□□□□□ -2.31
NUP98P52948 RNU4-22P-201ENST00000411058 166 ntBASIC0.63□□□□□ -2.31
NUP98P52948 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC0.63□□□□□ -2.31
NUP98P52948 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.63□□□□□ -2.31
NUP98P52948 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.63□□□□□ -2.31
NUP98P52948 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.63□□□□□ -2.31
NUP98P52948 snoU109.2-201ENST00000459316 135 ntBASIC0.63□□□□□ -2.31
NUP98P52948 MED28P2-201ENST00000475771 317 ntBASIC0.63□□□□□ -2.31
NUP98P52948 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.63□□□□□ -2.31
NUP98P52948 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.63□□□□□ -2.31
NUP98P52948 AL512310.8-201ENST00000550183 120 ntBASIC0.63□□□□□ -2.31
NUP98P52948 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.63□□□□□ -2.31
NUP98P52948 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC0.63□□□□□ -2.31
NUP98P52948 AC006270.3-201ENST00000605967 1036 ntBASIC0.63□□□□□ -2.31
NUP98P52948 RNU6-88P-201ENST00000606801 100 ntBASIC0.63□□□□□ -2.31
NUP98P52948 AL590240.4-201ENST00000616908 390 ntBASIC0.63□□□□□ -2.31
NUP98P52948 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.63□□□□□ -2.31
NUP98P52948 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.63□□□□□ -2.31
NUP98P52948 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.63□□□□□ -2.31
NUP98P52948 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
NUP98P52948 RNU6-862P-201ENST00000362804 105 ntBASIC0.62□□□□□ -2.31
NUP98P52948 RNU6-609P-201ENST00000365459 107 ntBASIC0.62□□□□□ -2.31
NUP98P52948 RNU6-439P-201ENST00000384188 106 ntBASIC0.62□□□□□ -2.31
NUP98P52948 RN7SKP200-201ENST00000410564 320 ntBASIC0.62□□□□□ -2.31
NUP98P52948 RNU2-62P-201ENST00000410868 191 ntBASIC0.62□□□□□ -2.31
NUP98P52948 MTCYBP5-201ENST00000423752 1135 ntBASIC0.62□□□□□ -2.31
NUP98P52948 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.62□□□□□ -2.31
NUP98P52948 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.62□□□□□ -2.31
NUP98P52948 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.62□□□□□ -2.31
NUP98P52948 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC0.62□□□□□ -2.31
NUP98P52948 RNU1-131P-201ENST00000458943 161 ntBASIC0.62□□□□□ -2.31
NUP98P52948 AL133373.1-201ENST00000497098 94 ntBASIC0.62□□□□□ -2.31
NUP98P52948 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.62□□□□□ -2.31
NUP98P52948 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.62□□□□□ -2.31
NUP98P52948 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
NUP98P52948 AC036111.3-201ENST00000526389 112 ntBASIC0.62□□□□□ -2.31
NUP98P52948 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.62□□□□□ -2.31
NUP98P52948 AL022154.1-201ENST00000604698 785 ntBASIC0.62□□□□□ -2.31
NUP98P52948 AC124016.2-201ENST00000610058 665 ntBASIC0.62□□□□□ -2.31
NUP98P52948 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.62□□□□□ -2.31
NUP98P52948 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.61□□□□□ -2.31
NUP98P52948 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
NUP98P52948 MIR412-201ENST00000362142 91 ntBASIC0.61□□□□□ -2.31
NUP98P52948 MIR302D-201ENST00000362275 68 ntBASIC0.61□□□□□ -2.31
NUP98P52948 RNU6-1176P-201ENST00000390955 107 ntBASIC0.61□□□□□ -2.31
NUP98P52948 AL603865.2-201ENST00000401679 213 ntBASIC0.61□□□□□ -2.31
NUP98P52948 AC083875.1-201ENST00000419509 405 ntBASIC0.61□□□□□ -2.31
NUP98P52948 UBE2D3P3-201ENST00000426992 425 ntBASIC0.61□□□□□ -2.31
NUP98P52948 MTCO3P28-201ENST00000513351 515 ntBASIC0.61□□□□□ -2.31
NUP98P52948 SNORA3.4-201ENST00000515969 96 ntBASIC0.61□□□□□ -2.31
NUP98P52948 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.61□□□□□ -2.31
NUP98P52948 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.61□□□□□ -2.31
NUP98P52948 BNIP3P26-201ENST00000600827 554 ntBASIC0.61□□□□□ -2.31
NUP98P52948 AL353778.1-201ENST00000603149 408 ntBASIC0.61□□□□□ -2.31
NUP98P52948 RNU6-87P-201ENST00000607561 108 ntBASIC0.61□□□□□ -2.31
NUP98P52948 AL109933.3-201ENST00000619095 188 ntBASIC0.61□□□□□ -2.31
NUP98P52948 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.61□□□□□ -2.31
NUP98P52948 AL589826.1-201ENST00000340697 249 ntBASIC0.61□□□□□ -2.31
NUP98P52948 RNA5SP327-201ENST00000362494 101 ntBASIC0.61□□□□□ -2.31
NUP98P52948 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
NUP98P52948 SNX2P2-201ENST00000424553 323 ntBASIC0.61□□□□□ -2.31
NUP98P52948 AL589872.1-201ENST00000426602 288 ntBASIC0.61□□□□□ -2.31
NUP98P52948 GTF2IP13-201ENST00000438487 386 ntBASIC0.61□□□□□ -2.31
NUP98P52948 RNA5SP216-201ENST00000516111 123 ntBASIC0.61□□□□□ -2.31
NUP98P52948 RN7SKP88-201ENST00000516847 250 ntBASIC0.61□□□□□ -2.31
NUP98P52948 RNU6-1028P-201ENST00000517164 93 ntBASIC0.61□□□□□ -2.31
NUP98P52948 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.61□□□□□ -2.31
NUP98P52948 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.61□□□□□ -2.31
NUP98P52948 MTATP6P2-201ENST00000603319 678 ntBASIC0.61□□□□□ -2.31
NUP98P52948 AC007363.1-201ENST00000604736 620 ntBASIC0.61□□□□□ -2.31
NUP98P52948 AL022345.2-201ENST00000606307 135 ntBASIC0.61□□□□□ -2.31
NUP98P52948 7SK.8-201ENST00000612110 250 ntBASIC0.61□□□□□ -2.31
NUP98P52948 7SK.11-201ENST00000615477 250 ntBASIC0.61□□□□□ -2.31
NUP98P52948 7SK.13-201ENST00000622040 250 ntBASIC0.61□□□□□ -2.31
NUP98P52948 FRG1KP-201ENST00000623592 341 ntBASIC0.61□□□□□ -2.31
NUP98P52948 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
NUP98P52948 Y_RNA.534-201ENST00000384599 112 ntBASIC0.6□□□□□ -2.31
NUP98P52948 MTND4P3-201ENST00000417829 541 ntBASIC0.6□□□□□ -2.31
NUP98P52948 PIGFP2-201ENST00000421400 651 ntBASIC0.6□□□□□ -2.31
NUP98P52948 NDUFB1P2-201ENST00000449477 176 ntBASIC0.6□□□□□ -2.31
NUP98P52948 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.6□□□□□ -2.31
NUP98P52948 HMGN2P9-201ENST00000476875 229 ntBASIC0.6□□□□□ -2.31
NUP98P52948 RNU6-1092P-201ENST00000516955 87 ntBASIC0.6□□□□□ -2.31
NUP98P52948 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.6□□□□□ -2.31
NUP98P52948 CENPUP1-201ENST00000526649 1202 ntBASIC0.6□□□□□ -2.31
NUP98P52948 AP003072.2-201ENST00000527756 676 ntBASIC0.6□□□□□ -2.31
NUP98P52948 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC0.6□□□□□ -2.31
NUP98P52948 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC0.6□□□□□ -2.31
NUP98P52948 AL031775.1-201ENST00000607014 887 ntBASIC0.6□□□□□ -2.31
NUP98P52948 AC068787.1-201ENST00000623908 691 ntBASIC0.6□□□□□ -2.31
NUP98P52948 AC068205.3-201ENST00000636385 468 ntBASIC0.6□□□□□ -2.31
NUP98P52948 AC099654.8-201ENST00000637757 681 ntBASIC0.6□□□□□ -2.31
NUP98P52948 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms