Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXN3O00409 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.14□□□□□ -1.91
FOXN3O00409 AC006504.6-201ENST00000590142 199 ntBASIC3.14□□□□□ -1.91
FOXN3O00409 AC012493.2-201ENST00000595083 291 ntBASIC3.14□□□□□ -1.91
FOXN3O00409 AC073346.2-201ENST00000624724 2058 ntBASIC3.14□□□□□ -1.91
FOXN3O00409 AC008264.2-201ENST00000610193 3731 ntBASIC3.14□□□□□ -1.91
FOXN3O00409 MTND4P1-201ENST00000457501 1466 ntBASIC3.14□□□□□ -1.91
FOXN3O00409 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXN3O00409 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXN3O00409 Z75746.1-201ENST00000440243 2080 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXN3O00409 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.13□□□□□ -1.91
FOXN3O00409 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 Y_RNA.123-201ENST00000363338 102 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 RNU6-622P-201ENST00000384272 103 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 RNU6-738P-201ENST00000384531 106 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 BTF3L4P2-201ENST00000392798 346 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 AC113618.1-201ENST00000416747 285 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 AC244505.4-201ENST00000434905 287 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.13□□□□□ -1.91
FOXN3O00409 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXN3O00409 SSXP5-201ENST00000443473 287 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 FTH1P25-201ENST00000447665 469 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 AC008571.1-201ENST00000467232 300 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.13□□□□□ -1.91
FOXN3O00409 ACA59.1-201ENST00000515966 143 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 RNU6-120P-201ENST00000516077 103 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 RNU6-1016P-201ENST00000516689 94 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 MIR3199-1-201ENST00000582434 88 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.13□□□□□ -1.91
FOXN3O00409 AP001836.1-201ENST00000604675 523 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 MIR8057-201ENST00000620957 69 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 AC092608.2-201ENST00000624427 218 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 MIR3651-201ENST00000630427 90 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.13□□□□□ -1.91
FOXN3O00409 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
FOXN3O00409 HAUS6P2-201ENST00000433254 2404 ntBASIC3.13□□□□□ -1.91
FOXN3O00409 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXN3O00409 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXN3O00409 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
FOXN3O00409 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXN3O00409 RNU6-227P-201ENST00000362865 103 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 Y_RNA.187-201ENST00000363918 113 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 SNORA33.2-201ENST00000365413 134 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXN3O00409 PMCHL1-202ENST00000423102 261 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXN3O00409 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXN3O00409 RPL22P13-201ENST00000493291 347 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 AC114801.2-201ENST00000503825 781 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 AC097462.2-201ENST00000504623 481 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 AC091874.1-201ENST00000511402 339 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 PTP4A1P4-201ENST00000512479 322 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 Y_RNA.670-201ENST00000516255 105 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 RN7SKP40-201ENST00000517211 242 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 COX6CP5-201ENST00000527162 228 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 CPDP1-201ENST00000579660 283 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 MIR5690-201ENST00000583739 73 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 AC018889.1-201ENST00000605372 397 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 AC009229.3-201ENST00000608056 282 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 PISRT1.1-201ENST00000616930 107 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 uc_338.22-201ENST00000622722 187 ntBASIC3.12□□□□□ -1.91
FOXN3O00409 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXN3O00409 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXN3O00409 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
FOXN3O00409 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXN3O00409 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXN3O00409 MIR422A-201ENST00000362286 90 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 Y_RNA.197-201ENST00000364004 102 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 RNU6-487P-201ENST00000365430 104 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 Y_RNA.404-201ENST00000383978 102 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 RNU6-890P-201ENST00000384121 107 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 RNA5SP390-201ENST00000410191 113 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 AL451074.5-201ENST00000415894 435 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXN3O00409 AC097463.2-201ENST00000421074 142 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 AL139281.1-201ENST00000422120 335 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 AL160004.2-201ENST00000432935 350 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXN3O00409 AL031659.1-201ENST00000447075 539 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 FO393415.2-201ENST00000480085 343 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 RPL23AP70-201ENST00000483361 460 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 RNU6-1046P-201ENST00000516538 107 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 RPPH1-2P-201ENST00000516688 293 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 SCARNA11.3-201ENST00000517276 130 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXN3O00409 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXN3O00409 HSPE1P4-201ENST00000550617 308 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 SNRPGP18-201ENST00000553000 214 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 AC007375.1-201ENST00000554513 578 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 AC109446.1-201ENST00000566172 220 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 MIR4273-201ENST00000582824 84 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 AC008737.2-201ENST00000599446 118 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 AC073410.2-201ENST00000603240 332 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 RNU6-91P-201ENST00000607774 107 ntBASIC3.11□□□□□ -1.91
FOXN3O00409 AC098657.3-201ENST00000620434 263 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms