Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 Y_RNA.140-201ENST00000363474 103 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-336P-201ENST00000364891 107 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 RNU4-66P-201ENST00000365199 138 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-434P-201ENST00000384376 107 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AL591034.2-201ENST00000402839 359 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 SUMO2P12-201ENST00000405924 140 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 Y_RNA.615-201ENST00000410769 117 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 EIF4EP4-201ENST00000424916 578 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 MICF-203ENST00000432679 129 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AC007969.2-201ENST00000441891 191 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 PSPHP1-201ENST00000450062 261 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AC083904.1-201ENST00000487828 231 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 SNORA25.15-201ENST00000516487 89 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 MTND4P7-201ENST00000523876 130 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AP003034.1-201ENST00000534621 422 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AC023050.3-201ENST00000541142 333 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AC103996.1-201ENST00000555468 102 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AC136619.2-201ENST00000563361 631 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 EIF1P4-201ENST00000572664 335 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 MIR5571-201ENST00000577998 113 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AC105245.1-201ENST00000581934 244 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AC010525.2-201ENST00000590920 195 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 VN1R80P-201ENST00000597126 338 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AL713866.2-201ENST00000603579 219 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 CTHRC1P1-201ENST00000605383 469 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 uc_338.14-201ENST00000613162 166 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 AC022202.1-201ENST00000613515 211 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 U4.7-201ENST00000638126 106 ntBASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
TRAV40A0A0B4J280 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AC135776.4-201ENST00000624300 1904 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 RNU1-17P-201ENST00000363022 152 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-1322P-201ENST00000364309 107 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-522P-201ENST00000364497 107 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-827P-201ENST00000365553 106 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 SNORD37.1-201ENST00000390968 65 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AL590002.1-201ENST00000406554 418 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 CYCSP48-201ENST00000417124 323 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AIMP1P2-201ENST00000425294 312 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 RPL7P12-201ENST00000446719 750 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AL031274.1-201ENST00000450334 232 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 RNU7-167P-201ENST00000459160 62 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AC068781.1-201ENST00000488231 618 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AC091874.1-201ENST00000511402 339 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-1281P-201ENST00000516223 105 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AC023824.2-201ENST00000566185 400 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AC092747.3-201ENST00000603769 301 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-85P-201ENST00000605989 107 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 RMST_3.1-201ENST00000611651 109 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 AC139792.2-201ENST00000624218 587 ntBASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
TRAV40A0A0B4J280 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 CENPCP1-201ENST00000533085 2578 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-451P-201ENST00000362921 107 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 RNU1-23P-201ENST00000363361 144 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-105P-201ENST00000363909 104 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 RNU5E-7P-201ENST00000365290 117 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 Y_RNA.399-201ENST00000383955 105 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-1215P-201ENST00000384441 102 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 MIR186-201ENST00000384988 86 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 MIR514A2-201ENST00000385131 88 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 MIR514A3-201ENST00000385132 88 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 MTCO1P20-201ENST00000425366 358 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC243964.1-201ENST00000441814 261 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms