Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 U4.3-201ENST00000621047 82 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 AL359880.1-201ENST00000621879 266 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC1.98□□□□□ -2.09
FOXA2Q9Y261 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AL136360.1-201ENST00000503377 1900 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AC092268.1-201ENST00000342691 405 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 RNU4-15P-201ENST00000362613 141 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 Y_RNA.194-201ENST00000363985 102 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 SNORD14D-201ENST00000384390 87 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 MIR17-201ENST00000385012 84 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC1.98□□□□□ -2.09
FOXA2Q9Y261 KRTAP19-11P-201ENST00000439851 104 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 DNAJC19P4-201ENST00000440115 345 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 MTCO2P3-201ENST00000442543 421 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 GPM6BP3-201ENST00000442797 145 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AL031659.1-201ENST00000447075 539 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 RPL21P99-201ENST00000480369 423 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.98□□□□□ -2.09
FOXA2Q9Y261 PTP4A1P4-201ENST00000512479 322 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 RNA5SP402-201ENST00000517148 110 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AC087854.1-201ENST00000519706 414 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 RNU6-323P-201ENST00000521915 107 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AL512360.1-201ENST00000555346 234 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 MIR3162-201ENST00000581818 82 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AC009314.1-201ENST00000603871 304 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AP001836.1-201ENST00000604675 523 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AP000654.2-201ENST00000605633 586 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AL357078.3-201ENST00000607528 618 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 AC103705.1-201ENST00000619013 241 ntBASIC1.98□□□□□ -2.09
FOXA2Q9Y261 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA2Q9Y261 SNORD32A-201ENST00000364805 84 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 Y_RNA.378-201ENST00000365652 113 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 RNU6-38P-201ENST00000384085 107 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 Y_RNA.504-201ENST00000384481 104 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 Y_RNA.510-201ENST00000384511 114 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 SNORA12-201ENST00000391162 147 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 CALM2P3-201ENST00000400429 449 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 MIR1262-201ENST00000408276 93 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 RN7SKP61-201ENST00000410642 295 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 SRIP3-201ENST00000413200 219 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.97□□□□□ -2.09
FOXA2Q9Y261 ARL5AP1-201ENST00000418991 388 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA2Q9Y261 TIMM9P3-201ENST00000428659 274 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 AC108938.1-201ENST00000451204 136 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA2Q9Y261 RNU6-333P-201ENST00000459117 107 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 Y_RNA.654-201ENST00000497848 106 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 AC091885.1-201ENST00000506658 268 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 RN7SKP24-201ENST00000515888 284 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 Y_RNA.693-201ENST00000516641 110 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 SNORA31.16-201ENST00000516773 139 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 RNU4ATAC17P-201ENST00000517272 120 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 HSPE1P18-201ENST00000517602 280 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.97□□□□□ -2.09
FOXA2Q9Y261 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA2Q9Y261 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA2Q9Y261 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA2Q9Y261 MIR6840-201ENST00000611937 71 ntBASIC1.97□□□□□ -2.09
FOXA2Q9Y261 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA2Q9Y261 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.97□□□□□ -2.09
FOXA2Q9Y261 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.96□□□□□ -2.1
FOXA2Q9Y261 RNA5SP276-201ENST00000362580 94 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 RNA5SP68-201ENST00000363885 119 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 SNORA46.1-201ENST00000391069 153 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 RNA5SP450-201ENST00000411206 102 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.96□□□□□ -2.1
FOXA2Q9Y261 CR769767.1-201ENST00000436337 346 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.96□□□□□ -2.1
FOXA2Q9Y261 MTND1P1-201ENST00000445453 368 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 MTND3P16-201ENST00000452205 344 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 RNU6-1037P-201ENST00000459571 107 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.96□□□□□ -2.1
FOXA2Q9Y261 SNORA19.2-201ENST00000516013 114 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 RNU6-991P-201ENST00000516168 107 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 RNA5SP320-201ENST00000516263 124 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AP000889.2-201ENST00000532684 490 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AC087241.2-201ENST00000535801 324 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AL512310.1-201ENST00000548639 172 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AC025423.5-201ENST00000550230 219 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AL118558.2-201ENST00000556294 238 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AC245505.1-201ENST00000556398 224 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AC004492.1-201ENST00000607036 742 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AC067747.1-201ENST00000608026 250 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AC092807.2-201ENST00000609367 243 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AL137847.3-201ENST00000611521 109 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 AC104237.2-201ENST00000612456 443 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 MIR1248-201ENST00000629190 106 ntBASIC1.96□□□□□ -2.1
FOXA2Q9Y261 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC1.96□□□□□ -2.1
FOXA2Q9Y261 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.95□□□□□ -2.1
FOXA2Q9Y261 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
FOXA2Q9Y261 Y_RNA.111-201ENST00000363248 100 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 SNORD114-30-201ENST00000364448 72 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms