Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 snoU13.15-201ENST00000459407 104 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AC093249.1-201ENST00000567049 203 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 MIR3126-201ENST00000577443 74 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AP001596.2-201ENST00000608410 312 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AC103591.3-201ENST00000608684 209 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AC008121.3-201ENST00000618726 433 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AC048344.4-201ENST00000619744 527 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AC139792.3-201ENST00000623525 224 ntBASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
VPS54Q9P1Q0 AL356292.1-201ENST00000283110 373 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 RNU6-212P-201ENST00000362642 104 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 SNORA16.1-201ENST00000364597 132 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 SNORA16B-201ENST00000364674 135 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 MIR561-201ENST00000385216 97 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 SNORA40.18-201ENST00000391200 128 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 MIR1289-2-201ENST00000408360 111 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 RNU2-23P-201ENST00000410545 195 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 SNORD56-201ENST00000413522 71 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AC010975.2-201ENST00000427781 588 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AC007969.2-201ENST00000441891 191 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 RNU7-180P-201ENST00000459240 63 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 RNU6-377P-201ENST00000515965 102 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 SNORA25.17-201ENST00000517184 124 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AK6P1-201ENST00000540219 478 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AC023050.3-201ENST00000541142 333 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 MIR4448-201ENST00000584360 86 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AC004223.2-201ENST00000590309 544 ntBASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
VPS54Q9P1Q0 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 RNU6-655P-201ENST00000362858 107 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 RNU1-23P-201ENST00000363361 144 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 MIR544A-201ENST00000384855 91 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 U8.13-201ENST00000390842 128 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 SUMO2P12-201ENST00000405924 140 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AC016907.1-201ENST00000419483 435 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AC010095.1-201ENST00000443543 144 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 RPL39P29-201ENST00000447779 157 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AL121594.1-201ENST00000475906 575 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 SNORA4.4-201ENST00000515921 135 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 RNU6-586P-201ENST00000517265 104 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 MTCO3P23-201ENST00000561363 289 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AC007229.1-201ENST00000590455 412 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AC078795.2-201ENST00000602835 1252 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AC017083.3-201ENST00000609955 700 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AC022202.1-201ENST00000613515 211 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AL158209.2-201ENST00000619266 216 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AC090517.3-201ENST00000625170 141 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 MIR6863-201ENST00000636112 90 ntBASIC2.1□□□□□ -2.07
VPS54Q9P1Q0 AC009487.4-201ENST00000624969 3585 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 RNU6-428P-201ENST00000362942 107 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 RNU6-266P-201ENST00000364225 107 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 Y_RNA.255-201ENST00000364581 97 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 SNORA25B-201ENST00000365507 128 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 Y_RNA.480-201ENST00000384364 102 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 SNORA46.1-201ENST00000391069 153 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 RNA5SP489-201ENST00000410986 109 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AL356379.1-201ENST00000414105 126 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 RPL23AP63-201ENST00000498752 471 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 CCDC34P1-201ENST00000507441 517 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 SNORA48.11-201ENST00000517015 89 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 MTND4P7-201ENST00000523876 130 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AC022880.1-201ENST00000534017 973 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 APOOP1-201ENST00000604695 592 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 MIR6845-201ENST00000613182 61 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 SDR42E1P4-201ENST00000620894 481 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AC068792.1-201ENST00000621354 417 ntBASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 AC007792.1-201ENST00000623023 402 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms