Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNA5SP295-201ENST00000362655 121 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 Y_RNA.176-201ENST00000363815 109 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 Y_RNA.210-201ENST00000364161 110 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 Y_RNA.452-201ENST00000384202 108 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-708P-201ENST00000384217 107 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 SNORA51.11-201ENST00000384442 131 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 MIR34B-201ENST00000385076 84 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-1077P-201ENST00000410506 102 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 AL353705.4-201ENST00000449661 238 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 AC115115.1-201ENST00000449927 248 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 RPS26P21-201ENST00000475397 348 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 RNU7-175P-201ENST00000515915 61 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 SNORA31.1-201ENST00000515993 133 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 SNORA31.5-201ENST00000516190 133 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-911P-201ENST00000516523 104 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 Y_RNA.706-201ENST00000516933 99 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 7SK.7-201ENST00000603504 247 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 AC073657.2-201ENST00000605661 303 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 MIR7112-201ENST00000616126 65 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 AC091903.1-201ENST00000624322 454 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 GABRG2-229ENST00000641017 3628 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 AP000560.1-201ENST00000624150 1937 ntBASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-238P-201ENST00000363313 106 ntBASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 Y_RNA.512-201ENST00000384518 102 ntBASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 AC009296.1-201ENST00000443146 155 ntBASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 BX510359.1-201ENST00000456973 237 ntBASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 snoU13.30-201ENST00000458951 104 ntBASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 RN7SL601P-201ENST00000471221 293 ntBASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 SNORD19.2-201ENST00000516978 73 ntBASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 AC004944.1-201ENST00000517807 3059 ntBASIC3.51□□□□□ -1.85
PCIF1Q9H4Z3 AL021368.2-201ENST00000606125 5352 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 RNU1-75P-201ENST00000347264 129 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 MIR208A-201ENST00000362287 71 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 Y_RNA.193-201ENST00000363979 102 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-1141P-201ENST00000364520 107 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-487P-201ENST00000365430 104 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 Y_RNA.358-201ENST00000365491 99 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 SNORA29-201ENST00000384183 140 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-505P-201ENST00000384427 107 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-1109P-201ENST00000391187 107 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 PTMAP5-201ENST00000393073 333 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-1140P-201ENST00000410517 106 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 PTGES3P4-201ENST00000426243 356 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 AC012308.1-201ENST00000451232 178 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 U8.22-201ENST00000459141 133 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 RNU7-87P-201ENST00000459343 62 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 RN7SL442P-201ENST00000473804 320 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 RPL30P12-201ENST00000474666 353 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 AC104564.1-201ENST00000493028 407 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 SNORA31.21-201ENST00000517180 77 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 SCARNA20.6-201ENST00000517251 106 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 AC109329.1-201ENST00000518744 317 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 AC104027.1-201ENST00000521887 300 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 AP002404.1-201ENST00000532005 451 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 HSPE1P4-201ENST00000550617 308 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 MIR5680-201ENST00000577577 84 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 RAC1P9-201ENST00000604990 392 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 AL356157.2-201ENST00000605122 111 ntBASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.5□□□□□ -1.85
PCIF1Q9H4Z3 AP001148.1-201ENST00000624124 2359 ntBASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 ZNF826P-207ENST00000622273 1910 ntBASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 SNORA36A-201ENST00000384221 132 ntBASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 Y_RNA.504-201ENST00000384481 104 ntBASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 Y_RNA.526-201ENST00000384572 110 ntBASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 MTCO3P19-201ENST00000415864 321 ntBASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 AL031183.1-201ENST00000457667 207 ntBASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 snoU13.22-201ENST00000459428 104 ntBASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 MIR3671-201ENST00000580455 88 ntBASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 uc_338.25-201ENST00000613756 156 ntBASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 AC010205.1-201ENST00000616668 449 ntBASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 147.1 ms