Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 VN1R80P-201ENST00000597126 338 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 U6atac.1-201ENST00000616025 117 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
ZNF541Q9H0D2 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
ZNF541Q9H0D2 SNORD114-19-201ENST00000363072 75 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 Y_RNA.295-201ENST00000364918 102 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 Y_RNA.378-201ENST00000365652 113 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 CIR1P3-201ENST00000405137 479 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 RNU6-1140P-201ENST00000410517 106 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 RPL36AP21-201ENST00000490372 323 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 AIG1P1-201ENST00000503376 148 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 CR383656.8-201ENST00000549046 145 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 snoU13.31-201ENST00000607291 104 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 AL357078.3-201ENST00000607528 618 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 AC009831.4-201ENST00000620744 325 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 MIR6132-201ENST00000622083 109 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 MTND4P5-201ENST00000435821 1374 ntBASIC2.59□□□□□ -2
ZNF541Q9H0D2 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.59□□□□□ -2
ZNF541Q9H0D2 Z75746.1-201ENST00000440243 2080 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 AL109809.4-201ENST00000603520 2185 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 RNU6-82P-201ENST00000363970 107 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 MIR583-201ENST00000384846 75 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.58□□□□□ -2
ZNF541Q9H0D2 HMGN2P35-201ENST00000412164 270 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 OR9R1P-201ENST00000412200 877 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 AC097463.2-201ENST00000421074 142 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.58□□□□□ -2
ZNF541Q9H0D2 ERLEC1P1-201ENST00000433806 578 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.58□□□□□ -2
ZNF541Q9H0D2 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.58□□□□□ -2
ZNF541Q9H0D2 UBE2V1P8-201ENST00000437166 265 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.58□□□□□ -2
ZNF541Q9H0D2 RPS15AP7-201ENST00000439294 405 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.58□□□□□ -2
ZNF541Q9H0D2 CCDC34P1-201ENST00000507441 517 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 RNU6-323P-201ENST00000521915 107 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.58□□□□□ -2
ZNF541Q9H0D2 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.58□□□□□ -2
ZNF541Q9H0D2 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.58□□□□□ -2
ZNF541Q9H0D2 AL138976.2-201ENST00000563989 694 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 MIR3670-2-201ENST00000582974 65 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 MIR3670-1-201ENST00000584160 65 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 MIR3670-3-201ENST00000584855 65 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 MIR4424-201ENST00000585257 86 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 AC092807.2-201ENST00000609367 243 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 MIR3670-4-201ENST00000612260 65 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 WWP1P1-201ENST00000466609 2769 ntBASIC2.58□□□□□ -2
ZNF541Q9H0D2 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.57□□□□□ -2
ZNF541Q9H0D2 RBBP8P1-201ENST00000449447 1844 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
ZNF541Q9H0D2 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.57□□□□□ -2
ZNF541Q9H0D2 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.57□□□□□ -2
ZNF541Q9H0D2 RNU6-942P-201ENST00000363002 107 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 Y_RNA.231-201ENST00000364358 102 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 RNU1-51P-201ENST00000365345 176 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 U8.8-201ENST00000365399 135 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 RNU6-908P-201ENST00000410160 94 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 RNU6-373P-201ENST00000411247 98 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 AL096701.2-201ENST00000416920 238 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 AC074117.2-201ENST00000417130 397 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.57□□□□□ -2
ZNF541Q9H0D2 MTND1P4-201ENST00000435196 415 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.57□□□□□ -2
ZNF541Q9H0D2 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.57□□□□□ -2
ZNF541Q9H0D2 Y_RNA.654-201ENST00000497848 106 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 AC023141.11-201ENST00000508864 202 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 AC109479.2-201ENST00000517842 174 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.57□□□□□ -2
ZNF541Q9H0D2 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.57□□□□□ -2
ZNF541Q9H0D2 AC023050.3-201ENST00000541142 333 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 AC004486.1-201ENST00000546846 233 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.57□□□□□ -2
ZNF541Q9H0D2 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.57□□□□□ -2
ZNF541Q9H0D2 AP000907.4-201ENST00000604143 237 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 AC107304.1-201ENST00000604229 296 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 AC021646.1-201ENST00000605469 484 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 RNU6-89P-201ENST00000606519 100 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 Z69720.2-201ENST00000624755 279 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 ZNF355P-201ENST00000427301 3216 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 AC010329.5-201ENST00000623497 2174 ntBASIC2.57□□□□□ -2
ZNF541Q9H0D2 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.56□□□□□ -2
ZNF541Q9H0D2 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.56□□□□□ -2
ZNF541Q9H0D2 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.56□□□□□ -2
ZNF541Q9H0D2 MTND4P27-201ENST00000450813 1354 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.56□□□□□ -2
ZNF541Q9H0D2 RNU6-78P-201ENST00000362897 107 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 Y_RNA.89-201ENST00000363031 102 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 RNU6-486P-201ENST00000363116 107 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 RNY3P3-201ENST00000363816 102 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 RNU4-20P-201ENST00000365601 151 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 RNU6-332P-201ENST00000391193 108 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.56□□□□□ -2
ZNF541Q9H0D2 AL139156.1-201ENST00000412785 841 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.56□□□□□ -2
ZNF541Q9H0D2 RPS3AP44-201ENST00000425466 790 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.56□□□□□ -2
ZNF541Q9H0D2 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.56□□□□□ -2
ZNF541Q9H0D2 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.56□□□□□ -2
ZNF541Q9H0D2 AC083904.1-201ENST00000487828 231 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms