Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-78P-201ENST00000362897 107 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 Y_RNA.212-201ENST00000364177 102 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-487P-201ENST00000365430 104 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 Y_RNA.390-201ENST00000383932 102 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-214P-201ENST00000384130 107 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 MIR450B-201ENST00000401182 78 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 FTH1P15-201ENST00000406984 280 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 RPL7P12-201ENST00000446719 750 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 MED28P2-201ENST00000475771 317 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-864P-201ENST00000516256 108 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 RNA5SP24-201ENST00000516478 95 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 SCARNA11.3-201ENST00000517276 130 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 VN1R107P-201ENST00000601784 209 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AL670379.10-201ENST00000604330 253 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AL670379.9-201ENST00000605428 253 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AC123912.5-201ENST00000605470 343 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AL022345.1-201ENST00000607292 135 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 uc_338.14-201ENST00000613162 166 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 FAM157A-202ENST00000615155 405 ntBASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.18□□□□□ -2.06
CCDC28BQ9BUN5 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 Y_RNA.166-201ENST00000363730 102 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-767P-201ENST00000384132 107 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-843P-201ENST00000384454 104 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-1106P-201ENST00000390845 107 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 AL122016.1-201ENST00000403365 367 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-1148P-201ENST00000410992 104 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 VN1R36P-201ENST00000414936 291 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 IFNA20P-201ENST00000436840 528 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 AC107626.1-201ENST00000471084 183 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 AC234781.5-201ENST00000508429 271 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 RNU5F-8P-201ENST00000515941 111 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 RNU5B-3P-201ENST00000516601 115 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 RNU1-40P-201ENST00000516816 164 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 RNU1-97P-201ENST00000516872 164 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 GTF3AP2-201ENST00000557014 266 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 AC074050.1-201ENST00000563247 211 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 AC011471.1-201ENST00000585766 187 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 AC009248.2-201ENST00000619826 254 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 AC009831.4-201ENST00000620744 325 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 AC138627.2-201ENST00000624202 601 ntBASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC28BQ9BUN5 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 CBX3P1-201ENST00000325243 554 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AC138393.1-203ENST00000327086 343 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 MIR147B-201ENST00000390185 80 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 MTND3P8-201ENST00000412909 339 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AL117339.3-201ENST00000418733 162 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 UBE2V1P4-201ENST00000425374 344 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 MTND4LP16-201ENST00000440828 295 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 MTCO2P3-201ENST00000442543 421 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 PMCHL2-203ENST00000457791 237 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-329P-201ENST00000459618 107 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-377P-201ENST00000515965 102 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 RNU6-256P-201ENST00000516747 97 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AC107953.1-201ENST00000522216 297 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AP005597.4-201ENST00000526762 229 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AC010186.2-204ENST00000537668 439 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AC025423.5-201ENST00000550230 219 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 ANP32BP3-201ENST00000559213 706 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 MIR548S-201ENST00000581352 82 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 MIR5002-201ENST00000584713 97 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AC023043.2-201ENST00000589678 1026 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AC021646.1-201ENST00000605469 484 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AC046143.2-201ENST00000609789 160 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AC022306.2-201ENST00000617563 647 ntBASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CCDC28BQ9BUN5 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.15□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 154.8 ms