Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC002064.3-201ENST00000623448 346 ntBASIC2.96□□□□□ -1.94
PAAF1Q9BRP4 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.96□□□□□ -1.94
PAAF1Q9BRP4 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.96□□□□□ -1.94
PAAF1Q9BRP4 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
PAAF1Q9BRP4 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 AC009541.1-201ENST00000438279 2662 ntBASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 MAPK10-322ENST00000641485 4530 ntBASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 RNU6-694P-201ENST00000364071 147 ntBASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 RNA5SP21-201ENST00000410917 96 ntBASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 RNU6-307P-201ENST00000516743 106 ntBASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 AL050343.2-201ENST00000607338 280 ntBASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 GABRG2-229ENST00000641017 3628 ntBASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
PAAF1Q9BRP4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AC103988.1-201ENST00000566382 2177 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 ZNF826P-207ENST00000622273 1910 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AC110774.1-201ENST00000623567 2018 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 Y_RNA.123-201ENST00000363338 102 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 RNA5SP126-201ENST00000365092 109 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 Y_RNA.315-201ENST00000365117 102 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 U8.8-201ENST00000365399 135 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 SNORD116-29-201ENST00000384516 83 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 MIR196B-201ENST00000384852 84 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 RNA5SP390-201ENST00000410191 113 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 USMG5P1-201ENST00000425964 177 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AC004383.1-201ENST00000438135 289 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AC009296.1-201ENST00000443146 155 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AP001324.2-201ENST00000461163 319 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AC090525.1-201ENST00000479116 478 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 MTCO3P13-201ENST00000577757 781 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 ZNF861P-201ENST00000588126 639 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AC011494.1-201ENST00000596454 237 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AC008739.2-201ENST00000597006 317 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AP001836.1-201ENST00000604675 523 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AC080078.3-201ENST00000605407 463 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AL133255.1-201ENST00000606374 441 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 AL160413.1-201ENST00000622780 310 ntBASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
PAAF1Q9BRP4 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AC093010.3-201ENST00000570269 15214 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 RNU6-859P-201ENST00000362728 107 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 Y_RNA.146-201ENST00000363549 102 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 RNU6-487P-201ENST00000365430 104 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 MIR9-1-201ENST00000385198 89 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 SAR1AP2-201ENST00000392696 594 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AP000275.1-201ENST00000411943 390 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 TRIAP1P1-201ENST00000427062 225 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AC112220.1-201ENST00000434628 355 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 RPS29P6-201ENST00000438196 145 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AC007969.2-201ENST00000441891 191 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 RPL39P29-201ENST00000447779 157 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 RNU6-1170P-201ENST00000515974 106 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AC007375.1-201ENST00000554513 578 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AC005899.2-201ENST00000584353 90 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AC090115.4-201ENST00000609970 188 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 uc_338.14-201ENST00000613162 166 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 AC007792.1-201ENST00000623023 402 ntBASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.93□□□□□ -1.94
PAAF1Q9BRP4 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 RNU4-82P-201ENST00000362443 140 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 SNORD114-19-201ENST00000363072 75 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 Y_RNA.404-201ENST00000383978 102 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 RNU6-310P-201ENST00000384655 107 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 RNU6-331P-201ENST00000384724 107 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 Y_RNA.579-201ENST00000390939 94 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 RNU6-1140P-201ENST00000410517 106 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 Y_RNA.646-201ENST00000410980 101 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 SAR1AP4-201ENST00000429225 591 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 Z98742.2-201ENST00000431564 187 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 RPL31P41-201ENST00000477967 372 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 FO393415.2-201ENST00000480085 343 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 RPL36AP48-201ENST00000485521 314 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 AP001025.1-201ENST00000486139 332 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 CKS1BP7-201ENST00000522230 235 ntBASIC2.92□□□□□ -1.94
PAAF1Q9BRP4 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 156.4 ms