Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CENPCP1-201ENST00000533085 2578 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 Y_RNA.169-201ENST00000363745 96 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 RNU6-105P-201ENST00000363909 104 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 Y_RNA.269-201ENST00000364685 89 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 SNORA8-201ENST00000384574 139 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 POLHP1-201ENST00000411806 470 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 BX295541.1-201ENST00000417774 250 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 HMGN2P38-201ENST00000423806 265 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 RNA5SP269-201ENST00000459032 137 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 SNRPGP7-201ENST00000469016 106 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 LRRC34P1-201ENST00000542742 915 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 MIR5089-201ENST00000580047 84 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 AC103987.3-201ENST00000582071 292 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 BNIP3P25-201ENST00000596023 559 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 SNRPGP19-201ENST00000603826 189 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 CYP2C61P-201ENST00000604072 290 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 uc_338.11-201ENST00000619132 160 ntBASIC1.98□□□□□ -2.09
HDDC3Q8N4P3 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 RNU4-91P-201ENST00000364778 135 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 RNU6-1303P-201ENST00000364841 107 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 RNU4-48P-201ENST00000365559 182 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 RNU4-52P-201ENST00000384209 138 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 RNU6-297P-201ENST00000384636 107 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 MIR597-201ENST00000384968 97 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 MIR1283-2-201ENST00000408621 87 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 MTND2P18-201ENST00000419962 1030 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 AC133104.1-201ENST00000429100 218 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 MTND1P18-201ENST00000448191 573 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 AC109479.2-201ENST00000517842 174 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 AP005639.2-201ENST00000527592 928 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 AL078605.1-201ENST00000603529 500 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 AC098657.3-201ENST00000620434 263 ntBASIC1.97□□□□□ -2.09
HDDC3Q8N4P3 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.96□□□□□ -2.09
HDDC3Q8N4P3 MTND4P1-201ENST00000457501 1466 ntBASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 RNU1-58P-201ENST00000362413 163 ntBASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 RNA5SP212-201ENST00000391223 107 ntBASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 MIR1294-201ENST00000408503 142 ntBASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 AL669831.1-202ENST00000428504 417 ntBASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 GTF2IP13-201ENST00000438487 386 ntBASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 MTCO3P7-201ENST00000510008 774 ntBASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 RNU5F-2P-201ENST00000516066 82 ntBASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 SNORA25.15-201ENST00000516487 89 ntBASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 AL590229.1-201ENST00000603497 542 ntBASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 AP000654.2-201ENST00000605633 586 ntBASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 U1.36-201ENST00000620684 176 ntBASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
HDDC3Q8N4P3 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 RNU6-393P-201ENST00000384475 107 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 RNA5SP489-201ENST00000410986 109 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 RNU6-293P-201ENST00000411259 106 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AL445567.1-201ENST00000439121 144 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 PRPS1P1-201ENST00000445305 876 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AL360221.1-201ENST00000445989 335 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 MTND1P27-201ENST00000451117 902 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AC025033.1-201ENST00000463883 194 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AL163540.1-201ENST00000485382 386 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AC093259.1-201ENST00000509755 300 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AC009646.1-201ENST00000510455 318 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 MTCO3P28-201ENST00000513351 515 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 LRRC34P2-201ENST00000514850 553 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 RNU1-40P-201ENST00000516816 164 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 RNU1-97P-201ENST00000516872 164 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AC023050.3-201ENST00000541142 333 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AC007375.1-201ENST00000554513 578 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AC009314.1-201ENST00000603871 304 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AC107304.1-201ENST00000604229 296 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 155.9 ms