Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU6-33P-201ENST00000384793 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 PGBD4P6-201ENST00000421501 610 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 AC018865.2-201ENST00000423631 129 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 AL358075.3-201ENST00000426289 226 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RPS15AP5-201ENST00000436276 388 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 AL035666.1-201ENST00000446195 348 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 MIR2053-201ENST00000459295 91 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-1037P-201ENST00000459571 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 AC128713.1-201ENST00000471495 306 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS53Q5VIR6 AC018437.1-201ENST00000492214 406 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 AC097462.2-201ENST00000504623 481 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 AC113155.1-201ENST00000511141 769 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS53Q5VIR6 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS53Q5VIR6 TRAV32-201ENST00000553993 340 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 CPDP1-201ENST00000579660 283 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 AC020895.1-201ENST00000595362 272 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-6P-201ENST00000606623 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS53Q5VIR6 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS53Q5VIR6 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
VPS53Q5VIR6 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VPS53Q5VIR6 MTND5P30-201ENST00000452896 1731 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 RNU6-778P-201ENST00000363269 103 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 Y_RNA.252-201ENST00000364556 101 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AC117470.1-201ENST00000381974 330 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 SNORD21-201ENST00000383953 95 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 RNU6-639P-201ENST00000384074 107 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 RNU6-842P-201ENST00000384269 107 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 Y_RNA.463-201ENST00000384271 102 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 SNORA41-201ENST00000384675 132 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AL031121.1-201ENST00000406553 254 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AL117339.3-201ENST00000418733 162 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AC009414.1-201ENST00000427200 443 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 RPS15AP10-201ENST00000432472 382 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AL513043.1-201ENST00000439124 535 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS53Q5VIR6 FTH1P25-201ENST00000447665 469 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS53Q5VIR6 MTATP6P7-201ENST00000453315 681 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 RPL23AP45-201ENST00000476406 468 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 RPS29P20-201ENST00000489592 171 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 RNU6-470P-201ENST00000515954 104 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 RNU1-103P-201ENST00000516502 125 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AC008121.1-201ENST00000603244 268 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AC116312.1-201ENST00000606841 314 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AC002064.3-201ENST00000623448 346 ntBASIC3.34□□□□□ -1.87
VPS53Q5VIR6 AC110491.1-201ENST00000562191 2010 ntBASIC3.34□□□□□ -1.88
VPS53Q5VIR6 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS53Q5VIR6 Y_RNA.2-201ENST00000362330 96 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 RNU6-490P-201ENST00000362985 107 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 RNU6-325P-201ENST00000411132 105 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 BPY2DP-201ENST00000422208 265 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 AC098831.1-201ENST00000440661 216 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS53Q5VIR6 AC013470.1-201ENST00000453438 462 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 RPS27AP10-201ENST00000496103 208 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 PTP4A1P4-201ENST00000512479 322 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 SNORA9.3-201ENST00000516383 129 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 RNA5SP384-201ENST00000516615 116 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 RN7SKP295-201ENST00000517264 153 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS53Q5VIR6 AC109446.1-201ENST00000566172 220 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 MIR4782-201ENST00000577987 79 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 LARP7P3-201ENST00000579888 337 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 MIR3605-201ENST00000583214 100 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS53Q5VIR6 AL121917.1-203ENST00000605534 577 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 AC005046.1-201ENST00000608515 625 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 SCARNA4-202ENST00000625402 129 ntBASIC3.33□□□□□ -1.88
VPS53Q5VIR6 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS53Q5VIR6 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS53Q5VIR6 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS53Q5VIR6 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS53Q5VIR6 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS53Q5VIR6 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS53Q5VIR6 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS53Q5VIR6 Y_RNA.145-201ENST00000363527 102 ntBASIC3.32□□□□□ -1.88
VPS53Q5VIR6 RNU6-1059P-201ENST00000363752 98 ntBASIC3.32□□□□□ -1.88
VPS53Q5VIR6 RNU6-308P-201ENST00000390957 107 ntBASIC3.32□□□□□ -1.88
VPS53Q5VIR6 RNU6-174P-201ENST00000410406 106 ntBASIC3.32□□□□□ -1.88
VPS53Q5VIR6 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS53Q5VIR6 AC011816.1-201ENST00000441346 546 ntBASIC3.32□□□□□ -1.88
VPS53Q5VIR6 AP001486.1-201ENST00000463339 476 ntBASIC3.32□□□□□ -1.88
VPS53Q5VIR6 AC008571.1-201ENST00000467232 300 ntBASIC3.32□□□□□ -1.88
VPS53Q5VIR6 AC103975.1-201ENST00000482506 483 ntBASIC3.32□□□□□ -1.88
VPS53Q5VIR6 SCARNA16.2-201ENST00000516520 172 ntBASIC3.32□□□□□ -1.88
VPS53Q5VIR6 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS53Q5VIR6 AC010620.2-201ENST00000600135 313 ntBASIC3.32□□□□□ -1.88
VPS53Q5VIR6 AC018889.1-201ENST00000605372 397 ntBASIC3.32□□□□□ -1.88
VPS53Q5VIR6 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VPS53Q5VIR6 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS53Q5VIR6 U6.99-201ENST00000637524 83 ntBASIC3.32□□□□□ -1.88
VPS53Q5VIR6 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS53Q5VIR6 AC138915.1-201ENST00000565427 1685 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms