Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 HSBP1P2-201ENST00000299671 229 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-414P-201ENST00000363705 104 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNU1-124P-201ENST00000363861 145 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-946P-201ENST00000383878 107 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-1235P-201ENST00000384559 107 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-817P-201ENST00000391083 104 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 DUXAP8-207ENST00000456786 622 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-498P-201ENST00000459468 107 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AC103851.1-201ENST00000506833 274 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNA5SP404-201ENST00000517118 132 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-902P-201ENST00000517212 91 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 BNIP3P27-201ENST00000599991 412 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AC022022.2-201ENST00000602989 360 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 HSPE1P19-201ENST00000603327 295 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AL021368.1-201ENST00000607490 540 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 OR4G3P-201ENST00000633500 913 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AC099654.8-201ENST00000637757 681 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 snoU2_19.1-201ENST00000362361 80 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 Y_RNA.85-201ENST00000363014 111 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-853P-201ENST00000364306 107 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-939P-201ENST00000384634 107 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNU2-3P-201ENST00000410144 191 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 UBE2V1P10-201ENST00000414685 269 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 USP9YP11-201ENST00000427537 717 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AC137499.1-201ENST00000427602 88 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 UBE2V1P8-201ENST00000437166 265 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AC108729.1-201ENST00000487812 947 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AHI1-208ENST00000488690 712 ntTSL 5 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-150P-201ENST00000516237 95 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-201P-201ENST00000517100 61 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AC107934.1-201ENST00000522215 217 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AC126544.2-201ENST00000625174 749 ntBASIC0.88□□□□□ -2.27
CCDC88AQ3V6T2 AC073343.1-201ENST00000328239 651 ntBASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 AC092628.1-201ENST00000436250 252 ntBASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-953P-201ENST00000459154 107 ntBASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 AC010587.2-201ENST00000511727 448 ntBASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 AP000763.2-201ENST00000540641 163 ntBASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 MIR3146-201ENST00000580367 79 ntBASIC0.87□□□□□ -2.27
CCDC88AQ3V6T2 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 SNORA75B-201ENST00000384053 137 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-72P-201ENST00000384285 79 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-298P-201ENST00000390888 96 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 RNA5SP511-201ENST00000410487 115 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AP000542.1-201ENST00000448473 371 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 RNA5SP269-201ENST00000459032 137 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 SUMO2P5-201ENST00000506790 245 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-351P-201ENST00000516097 100 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AP006587.4-201ENST00000526053 529 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AC012414.6-201ENST00000568241 401 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AL391001.1-201ENST00000602747 715 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AL356094.1-201ENST00000624663 1212 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 MIR424-201ENST00000362227 98 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-1285P-201ENST00000363480 105 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-1019P-201ENST00000364424 107 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-26P-201ENST00000383985 107 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 RNU2-39P-201ENST00000410604 198 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 MTCYBP5-201ENST00000423752 1135 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 RPL31P3-201ENST00000458430 332 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AC067942.3-201ENST00000512025 362 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-1092P-201ENST00000516955 87 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 MTND4LP25-201ENST00000570218 163 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AL136363.2-201ENST00000604173 851 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 AL109933.3-201ENST00000619095 188 ntBASIC0.86□□□□□ -2.27
CCDC88AQ3V6T2 ZNF29P-201ENST00000225587 168 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms