Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.83□□□□□ -1.96
HDAC4P56524 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.83□□□□□ -1.96
HDAC4P56524 ELOCP29-201ENST00000588193 334 ntBASIC2.83□□□□□ -1.96
HDAC4P56524 POLR3GP2-201ENST00000588366 668 ntBASIC2.83□□□□□ -1.96
HDAC4P56524 AL121917.1-203ENST00000605534 577 ntBASIC2.83□□□□□ -1.96
HDAC4P56524 AL022345.1-201ENST00000607292 135 ntBASIC2.83□□□□□ -1.96
HDAC4P56524 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.83□□□□□ -1.96
HDAC4P56524 AC063943.3-201ENST00000615562 356 ntBASIC2.83□□□□□ -1.96
HDAC4P56524 U4.7-201ENST00000638126 106 ntBASIC2.83□□□□□ -1.96
HDAC4P56524 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HDAC4P56524 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.83□□□□□ -1.96
HDAC4P56524 RNU6-428P-201ENST00000362942 107 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HDAC4P56524 RNU6-128P-201ENST00000383976 107 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 RNU6-1013P-201ENST00000384180 107 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 RNU6-748P-201ENST00000384648 107 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 MIR147B-201ENST00000390185 80 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.82□□□□□ -1.96
HDAC4P56524 RPS3AP52-201ENST00000435639 297 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 AC105272.1-201ENST00000438604 198 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.82□□□□□ -1.96
HDAC4P56524 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HDAC4P56524 AL441985.1-201ENST00000457727 251 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 UBL5P3-201ENST00000475112 231 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 RN7SL297P-201ENST00000483161 293 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.82□□□□□ -1.96
HDAC4P56524 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.82□□□□□ -1.96
HDAC4P56524 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.82□□□□□ -1.96
HDAC4P56524 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.82□□□□□ -1.96
HDAC4P56524 AC090616.3-201ENST00000582184 217 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 MIR3117-201ENST00000584034 78 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.82□□□□□ -1.96
HDAC4P56524 AC104237.2-201ENST00000612456 443 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.82□□□□□ -1.96
HDAC4P56524 AL359697.1-201ENST00000624879 587 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.82□□□□□ -1.96
HDAC4P56524 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HDAC4P56524 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.82□□□□□ -1.96
HDAC4P56524 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.82□□□□□ -1.96
HDAC4P56524 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
HDAC4P56524 RNU6-562P-201ENST00000362731 107 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 SNORA25.6-201ENST00000364121 118 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 RNU6-827P-201ENST00000365553 106 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 Y_RNA.509-201ENST00000384506 99 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 AL360182.1-201ENST00000397433 468 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 MIR548F5-201ENST00000408421 86 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 AL031274.1-201ENST00000450334 232 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 RNU7-187P-201ENST00000458985 68 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 MED28P2-201ENST00000475771 317 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.81□□□□□ -1.96
HDAC4P56524 RPL39P5-202ENST00000512505 151 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 AC093027.1-201ENST00000546698 429 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 AC026371.1-201ENST00000551867 419 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 AC009163.5-201ENST00000575421 637 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.81□□□□□ -1.96
HDAC4P56524 IGHVIII-44-202ENST00000636235 289 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.81□□□□□ -1.96
HDAC4P56524 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
HDAC4P56524 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.81□□□□□ -1.96
HDAC4P56524 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
HDAC4P56524 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
HDAC4P56524 AC010329.5-201ENST00000623497 2174 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 AL136360.1-201ENST00000503377 1900 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HDAC4P56524 Y_RNA.356-201ENST00000365475 113 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
HDAC4P56524 AL356057.3-201ENST00000402607 340 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 AL078595.1-201ENST00000404458 226 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 RN7SKP158-201ENST00000410453 326 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HDAC4P56524 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.8□□□□□ -1.96
HDAC4P56524 AC093019.1-201ENST00000443135 252 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.8□□□□□ -1.96
HDAC4P56524 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HDAC4P56524 AC130509.1-201ENST00000464158 433 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 MTND3P22-201ENST00000510932 243 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.8□□□□□ -1.96
HDAC4P56524 TRAV32-201ENST00000553993 340 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.8□□□□□ -1.96
HDAC4P56524 GTF3AP2-201ENST00000557014 266 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 MIR4790-201ENST00000577799 79 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 AC243960.4-201ENST00000600532 288 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 MIR3529-201ENST00000637713 78 ntBASIC2.8□□□□□ -1.96
HDAC4P56524 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.8□□□□□ -1.96
HDAC4P56524 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
HDAC4P56524 RNU4-73P-201ENST00000363164 141 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 RNU6-336P-201ENST00000364891 107 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 RNU6-214P-201ENST00000384130 107 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 SNORD116-20-201ENST00000384529 92 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 MIR9-1-201ENST00000385198 89 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.79□□□□□ -1.96
HDAC4P56524 UBE2V1P4-201ENST00000425374 344 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 AL445687.1-201ENST00000439946 251 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.79□□□□□ -1.96
HDAC4P56524 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.79□□□□□ -1.96
HDAC4P56524 AC012308.1-201ENST00000451232 178 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.79□□□□□ -1.96
HDAC4P56524 AC073901.1-201ENST00000462471 408 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 RPL23AP49-201ENST00000492925 468 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms