Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TUG1_2.1-201ENST00000614234 87 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.28□□□□□ -1.88
COL3A1P02461 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.28□□□□□ -1.88
COL3A1P02461 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL3A1P02461 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
COL3A1P02461 RNU4-50P-201ENST00000364361 141 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 PIGPP3-201ENST00000425307 415 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.28□□□□□ -1.88
COL3A1P02461 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.28□□□□□ -1.88
COL3A1P02461 snoU109.4-201ENST00000458953 143 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 RNU7-187P-201ENST00000458985 68 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 snoU13.26-201ENST00000459452 105 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 RNU7-138P-201ENST00000459479 64 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 RPL37P6-201ENST00000460682 294 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 MED28P2-201ENST00000475771 317 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.28□□□□□ -1.88
COL3A1P02461 RNU6-138P-201ENST00000515952 107 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 AC069113.1-201ENST00000517763 267 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 AC144568.1-201ENST00000520139 137 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 AC093331.1-201ENST00000521474 169 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 AC109446.1-201ENST00000566172 220 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL3A1P02461 MIR4273-201ENST00000582824 84 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 SDR42E1P2-201ENST00000614861 481 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 SDR42E1P4-201ENST00000620894 481 ntBASIC3.28□□□□□ -1.88
COL3A1P02461 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
COL3A1P02461 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
COL3A1P02461 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL3A1P02461 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.27□□□□□ -1.89
COL3A1P02461 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL3A1P02461 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL3A1P02461 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.27□□□□□ -1.89
COL3A1P02461 Y_RNA.19-201ENST00000362462 99 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 AC019155.1-201ENST00000382242 574 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 Y_RNA.555-201ENST00000384673 110 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 AL137014.1-201ENST00000420490 1226 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 FCF1P4-201ENST00000448326 183 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 RPL7P5-201ENST00000471472 736 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 FO393415.2-201ENST00000480085 343 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.27□□□□□ -1.89
COL3A1P02461 RNU7-4P-201ENST00000516961 62 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.27□□□□□ -1.89
COL3A1P02461 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.27□□□□□ -1.89
COL3A1P02461 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.27□□□□□ -1.89
COL3A1P02461 VN1R91P-201ENST00000594377 169 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 AC123786.2-201ENST00000603459 275 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 AC116447.1-201ENST00000613153 453 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 AC002076.2-201ENST00000617362 122 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 AL159153.1-201ENST00000619688 317 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 U4.3-201ENST00000621047 82 ntBASIC3.27□□□□□ -1.89
COL3A1P02461 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL3A1P02461 HSPA8P4-201ENST00000511877 1920 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL3A1P02461 RNU6-1329P-201ENST00000365664 107 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 RNU6-45P-201ENST00000384471 107 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 MIR625-201ENST00000385047 85 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.26□□□□□ -1.89
COL3A1P02461 BX276092.3-201ENST00000424182 230 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 NEFMP1-201ENST00000443423 1006 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 OR2AQ1P-201ENST00000451972 200 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.26□□□□□ -1.89
COL3A1P02461 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.26□□□□□ -1.89
COL3A1P02461 PRELID3BP1-201ENST00000457142 540 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 AC087385.1-201ENST00000475062 312 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 AC018437.1-201ENST00000492214 406 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.26□□□□□ -1.89
COL3A1P02461 RNU6-390P-201ENST00000516259 103 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 RNU6-677P-201ENST00000516914 101 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.26□□□□□ -1.89
COL3A1P02461 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.26□□□□□ -1.89
COL3A1P02461 AC006600.1-201ENST00000572529 153 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 RPS29P30-201ENST00000600975 111 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.26□□□□□ -1.89
COL3A1P02461 ZNF72P-201ENST00000425869 1908 ntBASIC3.26□□□□□ -1.89
COL3A1P02461 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL3A1P02461 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL3A1P02461 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL3A1P02461 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.25□□□□□ -1.89
COL3A1P02461 RNU6-174P-201ENST00000410406 106 ntBASIC3.25□□□□□ -1.89
COL3A1P02461 MTCO3P19-201ENST00000415864 321 ntBASIC3.25□□□□□ -1.89
COL3A1P02461 RPS15AP40-201ENST00000419621 391 ntBASIC3.25□□□□□ -1.89
COL3A1P02461 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.25□□□□□ -1.89
COL3A1P02461 FTH1P6-201ENST00000430768 320 ntBASIC3.25□□□□□ -1.89
COL3A1P02461 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.25□□□□□ -1.89
COL3A1P02461 CHEK2P4-201ENST00000450340 246 ntBASIC3.25□□□□□ -1.89
COL3A1P02461 TRBVB-201ENST00000477100 408 ntBASIC3.25□□□□□ -1.89
COL3A1P02461 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.25□□□□□ -1.89
COL3A1P02461 MTCO3P44-201ENST00000510977 541 ntBASIC3.25□□□□□ -1.89
COL3A1P02461 AC016065.2-201ENST00000514530 444 ntBASIC3.25□□□□□ -1.89
COL3A1P02461 RNU6-111P-201ENST00000517179 105 ntBASIC3.25□□□□□ -1.89
COL3A1P02461 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.25□□□□□ -1.89
COL3A1P02461 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.25□□□□□ -1.89
COL3A1P02461 MIR5692A1-201ENST00000580523 69 ntBASIC3.25□□□□□ -1.89
COL3A1P02461 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.25□□□□□ -1.89
COL3A1P02461 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.25□□□□□ -1.89
COL3A1P02461 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.24□□□□□ -1.89
COL3A1P02461 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL3A1P02461 AC138393.1-203ENST00000327086 343 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms