Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC007969.2-201ENST00000441891 191 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.22□□□□□ -2.21
CPSF4O95639 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.22□□□□□ -2.21
CPSF4O95639 RNA5SP269-201ENST00000459032 137 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 AC006512.1-201ENST00000468816 291 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.22□□□□□ -2.21
CPSF4O95639 AC074344.1-201ENST00000512823 224 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.22□□□□□ -2.21
CPSF4O95639 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.22□□□□□ -2.21
CPSF4O95639 SNORD27.1-201ENST00000516319 72 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.22□□□□□ -2.21
CPSF4O95639 AL161670.1-201ENST00000554348 137 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 HSBP1P1-201ENST00000555205 166 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 AC026271.5-201ENST00000577873 130 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 SNRPGP17-201ENST00000603780 214 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 AL670379.2-201ENST00000604983 252 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 AC004908.3-201ENST00000610248 625 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.22□□□□□ -2.21
CPSF4O95639 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 AL159153.1-201ENST00000619688 317 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 AC007792.1-201ENST00000623023 402 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 AC097372.5-201ENST00000623665 376 ntBASIC1.22□□□□□ -2.21
CPSF4O95639 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.22□□□□□ -2.21
CPSF4O95639 SNORD115-3-201ENST00000363100 82 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 U3.4-201ENST00000363352 213 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 RNU6-1097P-201ENST00000363586 107 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 RNU6-457P-201ENST00000363999 107 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 RNU6-1303P-201ENST00000364841 107 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 RNU6-282P-201ENST00000365357 103 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 RNU6-108P-201ENST00000365558 107 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 RNU6-546P-201ENST00000383991 107 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 SNORA40.19-201ENST00000390846 128 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 RNA5SP213-201ENST00000391031 106 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.21□□□□□ -2.22
CPSF4O95639 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.21□□□□□ -2.22
CPSF4O95639 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.21□□□□□ -2.22
CPSF4O95639 AL669831.1-202ENST00000428504 417 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 GTF2IP13-201ENST00000438487 386 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.21□□□□□ -2.22
CPSF4O95639 RPL39P29-201ENST00000447779 157 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC1.21□□□□□ -2.22
CPSF4O95639 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.21□□□□□ -2.22
CPSF4O95639 RPS29P15-201ENST00000458329 171 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC1.21□□□□□ -2.22
CPSF4O95639 MTND3P7-201ENST00000474435 343 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC1.21□□□□□ -2.22
CPSF4O95639 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
CPSF4O95639 AC104136.1-201ENST00000512969 394 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 MTCO3P28-201ENST00000513351 515 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 RNU6-1178P-201ENST00000516674 107 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.21□□□□□ -2.22
CPSF4O95639 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.21□□□□□ -2.22
CPSF4O95639 AC145350.1-201ENST00000567426 208 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 AC245014.2-201ENST00000603689 287 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 Z94722.1-201ENST00000604328 474 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 AC246785.4-201ENST00000605374 287 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 AL132822.1-201ENST00000617063 513 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 Z69720.2-201ENST00000624755 279 ntBASIC1.21□□□□□ -2.22
CPSF4O95639 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.2□□□□□ -2.22
CPSF4O95639 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.2□□□□□ -2.22
CPSF4O95639 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
CPSF4O95639 RNU6-527P-201ENST00000363425 104 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 Y_RNA.324-201ENST00000365165 102 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 RNU6-1029P-201ENST00000384109 107 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 RNU6-611P-201ENST00000384276 104 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 MIR1262-201ENST00000408276 93 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 AL158823.1-201ENST00000418441 478 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC1.2□□□□□ -2.22
CPSF4O95639 USP9YP18-201ENST00000425912 695 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 AL591043.1-201ENST00000432461 424 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 AL596276.1-201ENST00000434465 418 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 AC079448.1-201ENST00000449377 373 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.2□□□□□ -2.22
CPSF4O95639 AL122001.1-201ENST00000457027 370 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 PRELID3BP1-201ENST00000457142 540 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.2□□□□□ -2.22
CPSF4O95639 RNU7-182P-201ENST00000459009 62 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.2□□□□□ -2.22
CPSF4O95639 RPL30P1-201ENST00000488676 339 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC1.2□□□□□ -2.22
CPSF4O95639 AC117532.1-201ENST00000514638 323 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 RNU6-965P-201ENST00000516721 96 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 RNA5SP503-201ENST00000517047 117 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 RN7SKP256-201ENST00000517201 314 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.2□□□□□ -2.22
CPSF4O95639 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.2□□□□□ -2.22
CPSF4O95639 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.2□□□□□ -2.22
CPSF4O95639 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
CPSF4O95639 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.2□□□□□ -2.22
CPSF4O95639 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.2□□□□□ -2.22
CPSF4O95639 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC1.2□□□□□ -2.22
CPSF4O95639 AL136363.2-201ENST00000604173 851 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 AC063943.3-201ENST00000615562 356 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 AL359314.1-201ENST00000616913 261 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 SEPT14P19-203ENST00000633205 211 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 U4.7-201ENST00000638126 106 ntBASIC1.2□□□□□ -2.22
CPSF4O95639 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-37P-201ENST00000362692 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 Y_RNA.201-201ENST00000364052 96 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-11P-201ENST00000364234 107 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 194.6 ms