Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RPL22P18-201ENST00000417197 377 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC1.25□□□□□ -2.21
SHOX2O60902 MTND4P20-201ENST00000424125 869 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 MTND1P32-201ENST00000433043 938 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC1.25□□□□□ -2.21
SHOX2O60902 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC1.25□□□□□ -2.21
SHOX2O60902 RNU6-333P-201ENST00000459117 107 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.25□□□□□ -2.21
SHOX2O60902 AC087854.1-201ENST00000519706 414 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 AC022616.6-201ENST00000520479 119 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 AC107934.1-201ENST00000522215 217 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 COPS8P3-201ENST00000526024 482 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.25□□□□□ -2.21
SHOX2O60902 ADI1P3-201ENST00000549509 470 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.25□□□□□ -2.21
SHOX2O60902 AC091135.1-201ENST00000585943 307 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 AC016727.2-201ENST00000603988 621 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 AP000654.2-201ENST00000605633 586 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 AL139022.2-201ENST00000606934 443 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 AP002360.4-201ENST00000606980 481 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 AL049777.1-201ENST00000622740 518 ntBASIC1.25□□□□□ -2.21
SHOX2O60902 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SHOX2O60902 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.25□□□□□ -2.21
SHOX2O60902 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.24□□□□□ -2.21
SHOX2O60902 SNORA62.1-201ENST00000364287 154 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 MIR216A-201ENST00000385063 110 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 MTCO2P21-201ENST00000419780 677 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.24□□□□□ -2.21
SHOX2O60902 RPL22P17-201ENST00000438729 315 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 ZNF736P1Y-201ENST00000440402 1276 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 MTCO1P44-201ENST00000441935 243 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 USP9YP17-201ENST00000444617 696 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 AL590365.1-201ENST00000450788 243 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 RNVU1-2-201ENST00000516326 135 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 RNA5SP121-201ENST00000516537 101 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 AC005786.1-201ENST00000588553 154 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 AC078795.2-201ENST00000602835 1252 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 AC091895.1-201ENST00000624494 256 ntBASIC1.24□□□□□ -2.21
SHOX2O60902 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
SHOX2O60902 MIR96-201ENST00000362288 78 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 Y_RNA.85-201ENST00000363014 111 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 RNA5SP257-201ENST00000363023 116 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 RNA5SP62-201ENST00000363457 110 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 RNA5SP493-201ENST00000364115 91 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 Y_RNA.302-201ENST00000364997 102 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 RPS3AP36-201ENST00000398190 775 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 MIR548J-201ENST00000408833 112 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 RN7SKP200-201ENST00000410564 320 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 RPL30P13-201ENST00000418873 348 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC1.23□□□□□ -2.21
SHOX2O60902 AC137499.1-201ENST00000427602 88 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 AC084290.1-201ENST00000434995 374 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 MTND5P2-201ENST00000442927 1142 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 EXOSC3P1-201ENST00000448649 500 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.23□□□□□ -2.21
SHOX2O60902 snoU13.9-201ENST00000458927 103 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 AC004223.1-201ENST00000479840 271 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.23□□□□□ -2.21
SHOX2O60902 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.23□□□□□ -2.21
SHOX2O60902 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.23□□□□□ -2.21
SHOX2O60902 FAM106DP-201ENST00000586416 501 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 BNIP3P40-201ENST00000596017 556 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 AL139286.2-201ENST00000606838 396 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.23□□□□□ -2.21
SHOX2O60902 AL157834.3-201ENST00000615543 103 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 MIR1248-201ENST00000629190 106 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 MIR6086-201ENST00000638065 55 ntBASIC1.23□□□□□ -2.21
SHOX2O60902 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.23□□□□□ -2.21
SHOX2O60902 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.22□□□□□ -2.21
SHOX2O60902 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
SHOX2O60902 SNORD56.1-201ENST00000362913 68 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 RNU6-1179P-201ENST00000384667 107 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 MIR520E-201ENST00000384867 87 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 AL591704.2-201ENST00000421658 181 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 AC092648.1-201ENST00000425870 423 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC1.22□□□□□ -2.21
SHOX2O60902 AL445305.1-201ENST00000432577 575 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 RPS29P28-201ENST00000446439 141 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 RPS29P1-201ENST00000465274 159 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.22□□□□□ -2.21
SHOX2O60902 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.22□□□□□ -2.21
SHOX2O60902 BNIP3P6-201ENST00000549284 499 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 SUB1P4-201ENST00000566062 339 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 MIR1273G-201ENST00000577677 100 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 MIR3169-201ENST00000578032 83 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 MIR4421-201ENST00000578133 69 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 AL158032.1-201ENST00000605401 106 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 AC012409.4-201ENST00000612923 249 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC1.22□□□□□ -2.21
SHOX2O60902 OR4G3P-201ENST00000633500 913 ntBASIC1.22□□□□□ -2.21
SHOX2O60902 Y_RNA.115-201ENST00000363272 98 ntBASIC1.21□□□□□ -2.22
SHOX2O60902 RNU6-157P-201ENST00000383957 107 ntBASIC1.21□□□□□ -2.22
SHOX2O60902 SNORD26-201ENST00000384147 75 ntBASIC1.21□□□□□ -2.22
SHOX2O60902 RNU6-35P-201ENST00000384530 107 ntBASIC1.21□□□□□ -2.22
SHOX2O60902 RNU6-939P-201ENST00000384634 107 ntBASIC1.21□□□□□ -2.22
SHOX2O60902 MIR193B-201ENST00000384907 83 ntBASIC1.21□□□□□ -2.22
SHOX2O60902 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.21□□□□□ -2.22
SHOX2O60902 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms