Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU6-212P-201ENST00000362642 104 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 Y_RNA.40-201ENST00000362645 93 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 RNU6-266P-201ENST00000364225 107 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 RNU6-1322P-201ENST00000364309 107 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 Y_RNA.381-201ENST00000365666 102 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 OR5H15-201ENST00000383696 930 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 RNU6-1032P-201ENST00000384100 107 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AL606923.1-201ENST00000406616 190 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 RNU6-1245P-201ENST00000411130 106 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 RN7SKP192-201ENST00000411291 327 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 HMGB3P2-201ENST00000411913 584 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AL135786.1-201ENST00000415892 214 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AIMP1P2-201ENST00000425294 312 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
DDX28Q9NUL7 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.11□□□□□ -2.07
DDX28Q9NUL7 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.11□□□□□ -2.07
DDX28Q9NUL7 DNAJC19P4-201ENST00000440115 345 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AC009238.1-201ENST00000442165 424 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AC010095.1-201ENST00000443543 144 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AC009237.6-201ENST00000446969 424 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 RPL39P29-201ENST00000447779 157 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
DDX28Q9NUL7 SRRM1P2-201ENST00000464531 1192 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AC107401.1-201ENST00000503426 685 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AP001893.2-201ENST00000526949 202 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AC118273.2-201ENST00000532092 465 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AC093249.1-201ENST00000567049 203 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 MIR4424-201ENST00000585257 86 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 APOOP1-201ENST00000604695 592 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AC123912.5-201ENST00000605470 343 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.11□□□□□ -2.07
DDX28Q9NUL7 AC124864.2-201ENST00000624736 186 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 OR5AK4P-201ENST00000635912 903 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
DDX28Q9NUL7 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 RNU4-24P-201ENST00000364565 139 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 RNU6-1222P-201ENST00000384615 107 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 Y_RNA.559-201ENST00000384686 107 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 MIR544A-201ENST00000384855 91 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 MIR504-201ENST00000385065 83 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 TIMM9P3-201ENST00000428659 274 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 FDX1P2-201ENST00000450769 375 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 AC013470.1-201ENST00000453438 462 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 snoU13.26-201ENST00000459452 105 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 RNU6-261P-201ENST00000459506 102 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 AC083798.1-201ENST00000472671 131 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 RPL30P1-201ENST00000488676 339 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 RNA5SP364-201ENST00000516938 78 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 COPS8P3-201ENST00000526024 482 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 AC022880.1-201ENST00000534017 973 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 MIR5583-1-201ENST00000580941 59 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 AC103810.6-201ENST00000606708 136 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 AP000553.5-201ENST00000641933 54 ntBASIC2.1□□□□□ -2.07
DDX28Q9NUL7 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
DDX28Q9NUL7 SNORD114-30-201ENST00000364448 72 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 Y_RNA.409-201ENST00000383990 98 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 MTCO3P40-201ENST00000392516 676 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 RNA5SP425-201ENST00000410336 112 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 RNU2-40P-201ENST00000410833 196 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 HMGN2P38-201ENST00000423806 265 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 VN1R108P-201ENST00000431580 830 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 RPL7P54-201ENST00000438336 674 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 USP9YP8-201ENST00000441913 500 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 AL122001.1-201ENST00000457027 370 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 RNA5SP233-201ENST00000459153 113 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 AC079804.2-201ENST00000490376 200 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 CYCSP27-201ENST00000527643 293 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 AL512310.1-201ENST00000548639 172 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.09□□□□□ -2.07
DDX28Q9NUL7 AC091135.1-201ENST00000585943 307 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.09□□□□□ -2.07
DDX28Q9NUL7 VN1R107P-201ENST00000601784 209 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 AC103591.3-201ENST00000608684 209 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 HULC.1-201ENST00000612720 240 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 AC068792.1-201ENST00000621354 417 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 MIR7843-201ENST00000622274 79 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 AC097372.5-201ENST00000623665 376 ntBASIC2.09□□□□□ -2.07
DDX28Q9NUL7 KPNA2P1-201ENST00000458289 1591 ntBASIC2.09□□□□□ -2.08
DDX28Q9NUL7 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.08
DDX28Q9NUL7 CENPCP1-201ENST00000533085 2578 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
DDX28Q9NUL7 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
DDX28Q9NUL7 RNU6-1085P-201ENST00000363576 107 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms