Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MIR32-201ENST00000384965 70 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 OSTCP8-201ENST00000445117 448 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 CHEK2P4-201ENST00000450340 246 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 TOMM22P6-201ENST00000465035 409 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 RPL22P13-201ENST00000493291 347 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 ANXA2P1-201ENST00000505539 926 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 RN7SKP83-201ENST00000516512 178 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 RNU6-1198P-201ENST00000516904 67 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 AC008269.2-201ENST00000561915 1105 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 AL138963.2-201ENST00000605137 226 ntBASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.57□□□□□ -1.84
TRIM39Q9HCM9 ZNF72P-201ENST00000425869 1908 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 RNU6-212P-201ENST00000362642 104 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 RNU6-1010P-201ENST00000362757 107 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 Y_RNA.176-201ENST00000363815 109 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 Y_RNA.358-201ENST00000365491 99 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 RNU6-17P-201ENST00000384245 107 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 RNU6-196P-201ENST00000384315 107 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 SNORA51.11-201ENST00000384442 131 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 RNU6-18P-201ENST00000384527 107 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 MIR449B-201ENST00000384995 97 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 MIR1252-201ENST00000408861 65 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 CYCSP48-201ENST00000417124 323 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 AC091286.1-201ENST00000431233 461 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 Z82188.1-201ENST00000436709 154 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 AC026784.1-201ENST00000507986 352 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 RNU6-579P-201ENST00000516879 102 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 AC109329.1-201ENST00000518744 317 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 MIR4429-201ENST00000580105 73 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 MIR4444-1-201ENST00000581696 74 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 MIR3136-201ENST00000583498 78 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 MIR4444-2-201ENST00000584390 74 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 KLKP1-201ENST00000595979 403 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 AL390123.1-201ENST00000603216 237 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 PRR13P7-201ENST00000605538 430 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 7SK.10-201ENST00000621414 298 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 SNORA43.4-201ENST00000629559 138 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 AC073073.2-201ENST00000609827 2578 ntBASIC3.56□□□□□ -1.84
TRIM39Q9HCM9 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 RNU5B-2P-201ENST00000363036 113 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 Y_RNA.106-201ENST00000363189 100 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 RNU6-1285P-201ENST00000363480 105 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 RNU6-799P-201ENST00000363567 107 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 RNU6-463P-201ENST00000384340 107 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 RNU6-541P-201ENST00000384709 110 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 MIR548F4-201ENST00000408515 105 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 CYCSP4-201ENST00000429682 331 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 RN7SL330P-201ENST00000469709 307 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 AF186996.7-201ENST00000492781 209 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 RPS27P26-201ENST00000494583 239 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 AC093663.1-201ENST00000497190 394 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 Y_RNA.715-201ENST00000517082 110 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 AP002404.1-201ENST00000532005 451 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 AC090617.3-201ENST00000573670 475 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 AC010928.2-201ENST00000588017 287 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 MIR7851-201ENST00000610611 160 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 RNVU1-4-201ENST00000612985 164 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 AC092628.2-201ENST00000622492 339 ntBASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
TRIM39Q9HCM9 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 RNU6-874P-201ENST00000362390 105 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 MIR184-201ENST00000384962 84 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms