Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 RPL21P41-201ENST00000459863 264 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 AC083906.5-201ENST00000503722 328 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 AC022447.4-201ENST00000504053 364 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 RNU6-408P-201ENST00000515910 100 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 RNU6-475P-201ENST00000516073 104 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 RNA5SP76-201ENST00000516277 87 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 AC104576.1-201ENST00000524225 88 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 ELOCP29-201ENST00000588193 334 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 AC002545.1-201ENST00000592511 181 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 AC100812.1-201ENST00000607622 580 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 AL365434.2-201ENST00000607979 234 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 MIR8062-201ENST00000621515 85 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
EBF3Q9H4W6 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
EBF3Q9H4W6 UBE2L2-201ENST00000254302 429 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
EBF3Q9H4W6 RNU6-874P-201ENST00000362390 105 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 RNU6-1167P-201ENST00000363227 94 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 RNY3P11-201ENST00000364153 102 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
EBF3Q9H4W6 SNORA18.3-201ENST00000384122 132 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 MIR578-201ENST00000384828 96 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 MIR517A-201ENST00000385001 87 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 MIR181B1-201ENST00000385240 110 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 MT-TW-201ENST00000387382 68 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 Z85995.1-201ENST00000415547 335 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.06□□□□□ -1.92
EBF3Q9H4W6 BX276092.3-201ENST00000424182 230 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AL645568.3-201ENST00000433683 316 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 MTND2P29-201ENST00000438595 412 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AC105272.1-201ENST00000438604 198 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AC011816.1-201ENST00000441346 546 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AL360271.2-201ENST00000447710 161 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AC008571.1-201ENST00000467232 300 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 RPL31P60-201ENST00000478450 367 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AP004217.1-201ENST00000480579 346 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AC114801.2-201ENST00000503825 781 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 SNORA70.16-201ENST00000516390 95 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 ATP5F1P5-201ENST00000526403 760 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AC023157.2-201ENST00000540596 141 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.06□□□□□ -1.92
EBF3Q9H4W6 SUB1P3-201ENST00000564581 315 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AC016727.2-201ENST00000603988 621 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AL355297.3-201ENST00000604082 446 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AC090132.2-201ENST00000615881 347 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 AC007318.2-201ENST00000620999 243 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 MIR6733-201ENST00000635723 61 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 MIR4272-201ENST00000635924 64 ntBASIC3.06□□□□□ -1.92
EBF3Q9H4W6 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 Y_RNA.48-201ENST00000362710 103 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 RNU6-1329P-201ENST00000365664 107 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 RNU6-214P-201ENST00000384130 107 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AL603908.1-201ENST00000406098 201 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 MIR1252-201ENST00000408861 65 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 RPL21P90-201ENST00000415692 466 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 RPL23AP50-201ENST00000434149 455 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 RPL37P4-201ENST00000448908 268 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 RN7SL20P-201ENST00000488827 297 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 MTND3P25-201ENST00000509243 135 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 RN7SKP43-201ENST00000516173 320 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 RNA5SP471-201ENST00000516971 106 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AC022616.4-201ENST00000522985 181 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 CYCSP39-201ENST00000565821 309 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AC109446.1-201ENST00000566172 220 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AL512605.2-201ENST00000592972 256 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AC098826.3-201ENST00000603823 466 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AL161798.1-201ENST00000604630 131 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AC138627.2-201ENST00000624202 601 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AC233263.6-201ENST00000631132 1963 ntBASIC3.05□□□□□ -1.92
EBF3Q9H4W6 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
EBF3Q9H4W6 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.04□□□□□ -1.92
EBF3Q9H4W6 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.04□□□□□ -1.92
EBF3Q9H4W6 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 136.8 ms