Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MIR218-1-201ENST00000384999 110 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 MIR548F1-201ENST00000408667 84 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 Y_RNA.619-201ENST00000410951 90 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 CYCSP33-201ENST00000414485 327 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 ARL5AP1-201ENST00000418991 388 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 AL445646.1-201ENST00000431784 216 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 AL591043.1-201ENST00000432461 424 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 RPS27P27-201ENST00000498779 255 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 AC091885.1-201ENST00000506658 268 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 SNORA25.11-201ENST00000515935 105 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 RNU6-377P-201ENST00000515965 102 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 LRRC37A5P-203ENST00000580181 585 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 AC092747.3-201ENST00000603769 301 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 AP000787.2-201ENST00000604432 568 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 AC096772.1-201ENST00000609146 564 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 MIR3529-201ENST00000637713 78 ntBASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.63□□□□□ -1.99
ZNF541Q9H0D2 OR4G1P-203ENST00000641984 1631 ntBASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 Y_RNA.38-201ENST00000362617 102 ntBASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 Y_RNA.399-201ENST00000383955 105 ntBASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 RNU1-109P-201ENST00000383960 147 ntBASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 Y_RNA.450-201ENST00000384198 113 ntBASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 RNU6-1106P-201ENST00000390845 107 ntBASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 RNU2-3P-201ENST00000410144 191 ntBASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 SCARNA11.3-201ENST00000517276 130 ntBASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 RMST_4.1-201ENST00000616886 107 ntBASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 FER-210ENST00000628534 558 ntTSL 5 BASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.62□□□□□ -1.99
ZNF541Q9H0D2 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 AL359854.1-201ENST00000614203 1594 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 RNY4P14-201ENST00000363656 96 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 SNORA25.6-201ENST00000364121 118 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 Y_RNA.796-201ENST00000364268 102 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 SNORA68.1-201ENST00000364537 132 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 Y_RNA.799-201ENST00000364992 102 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 RNU6-38P-201ENST00000384085 107 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 Y_RNA.466-201ENST00000384294 113 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 RNU6-1245P-201ENST00000411130 106 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 POLHP1-201ENST00000411806 470 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 AC004383.1-201ENST00000438135 289 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 AL031274.1-201ENST00000450334 232 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 RNU6-333P-201ENST00000459117 107 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 AC112771.1-201ENST00000463581 102 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 DYNLL1P5-201ENST00000467158 270 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 AC008571.1-201ENST00000467232 300 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 MED28P2-201ENST00000475771 317 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 RNU6-189P-201ENST00000516120 101 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 RPPH1-2P-201ENST00000516688 293 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 CENPUP1-201ENST00000526649 1202 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 OR1M4P-201ENST00000589199 287 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 AC010525.2-201ENST00000590920 195 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 RNU6-85P-201ENST00000605989 107 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 AL160394.1-201ENST00000624765 724 ntBASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
ZNF541Q9H0D2 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 SNORD56.1-201ENST00000362913 68 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 RNU6-266P-201ENST00000364225 107 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 Y_RNA.355-201ENST00000365462 98 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 MIR627-201ENST00000384979 97 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 RNU6-648P-201ENST00000410190 107 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 ZNF885P-201ENST00000420174 1098 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 EIF1P1-201ENST00000421436 341 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 USP9YP18-201ENST00000425912 695 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 AC124916.1-201ENST00000444020 547 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 RNA5SP112-201ENST00000515937 99 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 SNORA31.6-201ENST00000516241 130 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 RNA5SP200-201ENST00000516360 103 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 RNU5B-3P-201ENST00000516601 115 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 SNORA43.2-201ENST00000516652 128 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 CYCSP27-201ENST00000527643 293 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 AP000763.2-201ENST00000540641 163 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 GNAI2P1-201ENST00000541815 315 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 MIR3199-1-201ENST00000582434 88 ntBASIC2.6□□□□□ -1.99
ZNF541Q9H0D2 MIR3117-201ENST00000584034 78 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms