Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.92□□□□□ -2.1
VPS35Q96QK1 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.91□□□□□ -2.1
VPS35Q96QK1 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS35Q96QK1 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
VPS35Q96QK1 RNU6-611P-201ENST00000384276 104 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 MIR544A-201ENST00000384855 91 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 RNA5SP450-201ENST00000411206 102 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
VPS35Q96QK1 MTCO2P11-201ENST00000431069 680 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 RPS15AP10-201ENST00000432472 382 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS35Q96QK1 MTND4P32-201ENST00000437189 1237 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS35Q96QK1 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.91□□□□□ -2.1
VPS35Q96QK1 AL122001.1-201ENST00000457027 370 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 AC098862.1-201ENST00000504991 413 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 MTND2P33-201ENST00000506452 1031 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.91□□□□□ -2.1
VPS35Q96QK1 LRRC34P2-201ENST00000514850 553 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 RNA5SP182-201ENST00000516064 82 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS35Q96QK1 AP001893.2-201ENST00000526949 202 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 AP000873.5-201ENST00000533906 236 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 AC023050.3-201ENST00000541142 333 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 OSBPL9P5-201ENST00000542581 171 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 AC018630.3-201ENST00000542637 96 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 OR11H5P-201ENST00000554039 926 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 MTND3P12-201ENST00000559068 328 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS35Q96QK1 AL158063.1-201ENST00000615349 536 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 AC078883.4-201ENST00000623218 367 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS35Q96QK1 AP006437.1-201ENST00000641440 3685 ntBASIC1.91□□□□□ -2.1
VPS35Q96QK1 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
VPS35Q96QK1 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.9□□□□□ -2.1
VPS35Q96QK1 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.1
VPS35Q96QK1 SNORD115-3-201ENST00000363100 82 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 RNU6-348P-201ENST00000384386 107 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 RNU6-393P-201ENST00000384475 107 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 RNU6-1127P-201ENST00000384580 107 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 RNU6-1222P-201ENST00000384615 107 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 SNORA40.19-201ENST00000390846 128 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 SNORD70.1-201ENST00000391007 85 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 MIR1261-201ENST00000408659 82 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 AC096920.1-201ENST00000423991 241 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 USP9YP29-201ENST00000445112 563 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 PRPS1P1-201ENST00000445305 876 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 AC132479.1-201ENST00000449160 144 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 GMFBP1-201ENST00000467831 427 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 RNU2-69P-201ENST00000516061 100 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 RNU6-965P-201ENST00000516721 96 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 MTCO2P4-201ENST00000517968 247 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 AL391840.1-201ENST00000571144 367 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 MIR4298-201ENST00000584380 73 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 AC025449.1-201ENST00000603896 529 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 AC123912.5-201ENST00000605470 343 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 AC009318.2-201ENST00000610917 651 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 AC091834.1-201ENST00000614543 472 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 AL132822.1-201ENST00000617063 513 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 AC008147.4-201ENST00000617570 1204 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
VPS35Q96QK1 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 ZNF702P-202ENST00000434269 1966 ntBASIC1.9□□□□□ -2.11
VPS35Q96QK1 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
VPS35Q96QK1 RNA5SP276-201ENST00000362580 94 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 SNORD116-8-201ENST00000384365 95 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 RNU6-434P-201ENST00000384376 107 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 SNORA16.2-201ENST00000390991 127 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 AL512604.1-201ENST00000404812 257 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 SUMO2P12-201ENST00000405924 140 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 RNU6-1245P-201ENST00000411130 106 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.89□□□□□ -2.11
VPS35Q96QK1 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.89□□□□□ -2.11
VPS35Q96QK1 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.89□□□□□ -2.11
VPS35Q96QK1 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.89□□□□□ -2.11
VPS35Q96QK1 PRELID3BP1-201ENST00000457142 540 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 snoU13.26-201ENST00000459452 105 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 ARL2BPP4-201ENST00000506854 471 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 AC117532.1-201ENST00000514638 323 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 RNU6-377P-201ENST00000515965 102 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.89□□□□□ -2.11
VPS35Q96QK1 AC087752.4-201ENST00000605911 462 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 AC008536.2-201ENST00000607284 349 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.89□□□□□ -2.11
VPS35Q96QK1 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.89□□□□□ -2.11
VPS35Q96QK1 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
VPS35Q96QK1 ZNF680P1-201ENST00000436625 1469 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms