Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC068792.1-201ENST00000621354 417 ntBASIC2.66□□□□□ -1.98
SKA1Q96BD8 AC241585.2-209ENST00000638217 143 ntBASIC2.66□□□□□ -1.98
SKA1Q96BD8 RNU6-1141P-201ENST00000364520 107 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
SKA1Q96BD8 AL162578.1-201ENST00000406202 378 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 HMGB3P2-201ENST00000411913 584 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 ARL5AP1-201ENST00000418991 388 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 FTH1P25-201ENST00000447665 469 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 SNORA31.11-201ENST00000516528 139 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 RNU6-667P-201ENST00000517186 102 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.65□□□□□ -1.99
SKA1Q96BD8 AC103996.1-201ENST00000555468 102 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 MIR3124-201ENST00000582636 67 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.65□□□□□ -1.99
SKA1Q96BD8 AC078899.2-201ENST00000595282 212 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.65□□□□□ -1.99
SKA1Q96BD8 SNRPGP17-201ENST00000603780 214 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 AP000560.1-201ENST00000624150 1937 ntBASIC2.65□□□□□ -1.99
SKA1Q96BD8 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
SKA1Q96BD8 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
SKA1Q96BD8 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
SKA1Q96BD8 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
SKA1Q96BD8 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
SKA1Q96BD8 RNU6-1285P-201ENST00000363480 105 ntBASIC2.64□□□□□ -1.99
SKA1Q96BD8 RNU6-692P-201ENST00000384496 107 ntBASIC2.64□□□□□ -1.99
SKA1Q96BD8 POLHP1-201ENST00000411806 470 ntBASIC2.64□□□□□ -1.99
SKA1Q96BD8 RPS15AP10-201ENST00000432472 382 ntBASIC2.64□□□□□ -1.99
SKA1Q96BD8 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.64□□□□□ -1.99
SKA1Q96BD8 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.64□□□□□ -1.99
SKA1Q96BD8 RNU5F-2P-201ENST00000516066 82 ntBASIC2.64□□□□□ -1.99
SKA1Q96BD8 RNA5SP148-201ENST00000516527 94 ntBASIC2.64□□□□□ -1.99
SKA1Q96BD8 Y_RNA.693-201ENST00000516641 110 ntBASIC2.64□□□□□ -1.99
SKA1Q96BD8 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.64□□□□□ -1.99
SKA1Q96BD8 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.64□□□□□ -1.99
SKA1Q96BD8 AL512360.1-201ENST00000555346 234 ntBASIC2.64□□□□□ -1.99
SKA1Q96BD8 AC245505.1-201ENST00000556398 224 ntBASIC2.64□□□□□ -1.99
SKA1Q96BD8 MIR3136-201ENST00000583498 78 ntBASIC2.64□□□□□ -1.99
SKA1Q96BD8 AL031274.2-201ENST00000599419 203 ntBASIC2.64□□□□□ -1.99
SKA1Q96BD8 CTSLP2-204ENST00000629029 392 ntBASIC2.64□□□□□ -1.99
SKA1Q96BD8 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.64□□□□□ -1.99
SKA1Q96BD8 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
SKA1Q96BD8 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.64□□□□□ -1.99
SKA1Q96BD8 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
SKA1Q96BD8 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
SKA1Q96BD8 RNU4-56P-201ENST00000364700 142 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 RNU6-43P-201ENST00000384302 107 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 SNORA40.19-201ENST00000390846 128 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 CBX3P6-201ENST00000430257 527 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.63□□□□□ -1.99
SKA1Q96BD8 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.63□□□□□ -1.99
SKA1Q96BD8 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.63□□□□□ -1.99
SKA1Q96BD8 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.63□□□□□ -1.99
SKA1Q96BD8 AC087884.1-201ENST00000469738 328 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.63□□□□□ -1.99
SKA1Q96BD8 AC009646.1-201ENST00000510455 318 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 AC022616.8-201ENST00000533569 253 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 AC018630.3-201ENST00000542637 96 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 AC091544.4-201ENST00000555268 342 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 AC092747.3-201ENST00000603769 301 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 AC103705.1-201ENST00000619013 241 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 YWHAEP7-203ENST00000622054 312 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 AC243829.7-201ENST00000633081 225 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
SKA1Q96BD8 AC069528.2-201ENST00000624849 1991 ntBASIC2.63□□□□□ -1.99
SKA1Q96BD8 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
SKA1Q96BD8 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
SKA1Q96BD8 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
SKA1Q96BD8 SNORD62.1-201ENST00000362541 86 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 U3.12-201ENST00000364498 214 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 RNU6-38P-201ENST00000384085 107 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 SNORA70B-201ENST00000384210 135 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 RNU6-611P-201ENST00000384276 104 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 Y_RNA.517-201ENST00000384551 106 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
SKA1Q96BD8 RNA5SP210-201ENST00000391034 120 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 CALM2P3-201ENST00000400429 449 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 MTCO3P41-201ENST00000414801 328 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 SNAP23P1-201ENST00000433229 246 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 AC244670.1-201ENST00000436879 112 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC2.62□□□□□ -1.99
SKA1Q96BD8 AL137159.1-201ENST00000452808 512 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 RNU6-333P-201ENST00000459117 107 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 AC107032.1-201ENST00000485945 480 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 SRIP1-201ENST00000489235 288 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 HMGB1P35-201ENST00000503360 598 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 AC008413.1-201ENST00000511864 177 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 RNA5SP282-201ENST00000516355 108 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 RNA5SP82-201ENST00000516707 92 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 RNU6-835P-201ENST00000516974 104 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.62□□□□□ -1.99
SKA1Q96BD8 AC087854.1-201ENST00000519706 414 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.62□□□□□ -1.99
SKA1Q96BD8 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.62□□□□□ -1.99
SKA1Q96BD8 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.62□□□□□ -1.99
SKA1Q96BD8 MYL12BP1-201ENST00000569826 507 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 MIR4529-201ENST00000578110 78 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 AC009314.1-201ENST00000603871 304 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 AL034555.1-201ENST00000604816 211 ntBASIC2.62□□□□□ -1.99
SKA1Q96BD8 AC018889.1-201ENST00000605372 397 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms