Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 Y_RNA.451-201ENST00000384200 100 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 Y_RNA.524-201ENST00000384564 100 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 Y_RNA.561-201ENST00000384694 100 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 SNORA12.2-201ENST00000391040 156 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.29□□□□□ -1.88
COL4A3Q01955 RPL23AP22-201ENST00000437556 453 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 AC013470.1-201ENST00000453438 462 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.29□□□□□ -1.88
COL4A3Q01955 AL139109.1-201ENST00000455491 297 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 RNU7-87P-201ENST00000459343 62 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 AC067942.3-201ENST00000512025 362 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 RNU6-1338P-201ENST00000516328 91 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 SCARNA15.2-201ENST00000516409 127 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 DEFB108E-201ENST00000524692 240 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 MIR4435-1-201ENST00000582552 80 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 AC004792.1-201ENST00000614523 137 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 AL161629.2-201ENST00000615347 275 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.29□□□□□ -1.88
COL4A3Q01955 MIR6715B-201ENST00000637172 77 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL4A3Q01955 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.29□□□□□ -1.88
COL4A3Q01955 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL4A3Q01955 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.29□□□□□ -1.88
COL4A3Q01955 HSPA8P1-201ENST00000425843 1833 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 LINC02555-201ENST00000563933 1951 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A3Q01955 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.28□□□□□ -1.88
COL4A3Q01955 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A3Q01955 AC062016.1-201ENST00000355719 319 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
COL4A3Q01955 Y_RNA.29-201ENST00000362570 113 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 Y_RNA.54-201ENST00000362766 105 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 snoU2_19.2-201ENST00000363024 80 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 SNORD14B-201ENST00000364533 90 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 Y_RNA.462-201ENST00000384268 102 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 MIR10A-201ENST00000385043 110 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 MIR504-201ENST00000385065 83 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 SNORA40C-201ENST00000391285 128 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 AC126124.2-201ENST00000413542 321 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 EEF1A1P41-201ENST00000414667 207 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 TMEM167AP1-201ENST00000423409 219 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A3Q01955 AC010469.2-201ENST00000496412 480 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 RNU6-406P-201ENST00000516470 107 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 NDUFB9P3-201ENST00000521269 501 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.28□□□□□ -1.88
COL4A3Q01955 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.28□□□□□ -1.88
COL4A3Q01955 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.28□□□□□ -1.88
COL4A3Q01955 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A3Q01955 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A3Q01955 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.28□□□□□ -1.88
COL4A3Q01955 CEP170P1-201ENST00000502249 4587 ntBASIC3.28□□□□□ -1.88
COL4A3Q01955 AC017071.1-201ENST00000564407 2204 ntBASIC3.28□□□□□ -1.89
COL4A3Q01955 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.89
COL4A3Q01955 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.27□□□□□ -1.89
COL4A3Q01955 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
COL4A3Q01955 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.27□□□□□ -1.89
COL4A3Q01955 RNU6-227P-201ENST00000362865 103 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 Y_RNA.118-201ENST00000363300 101 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 Y_RNA.143-201ENST00000363520 106 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 Y_RNA.555-201ENST00000384673 110 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 RPL21P75-201ENST00000396599 483 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 MIR887-201ENST00000401258 79 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 RPL21P28-201ENST00000401418 483 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 RPS29P13-201ENST00000402041 169 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AL603910.2-201ENST00000407268 136 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 Z85995.1-201ENST00000415547 335 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AL117339.3-201ENST00000418733 162 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AL590556.1-201ENST00000423231 483 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 MTCO3P29-201ENST00000432119 779 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 RPL21P39-201ENST00000463605 483 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 RPS29P27-201ENST00000463711 170 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.27□□□□□ -1.89
COL4A3Q01955 AC093591.1-201ENST00000491435 481 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 RPL21P16-201ENST00000495531 483 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 SNORA31.20-201ENST00000517111 133 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AC022868.1-201ENST00000517767 391 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AC090281.1-201ENST00000523019 276 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AC091544.4-201ENST00000555268 342 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 MED28P6-201ENST00000558776 231 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AC104581.2-201ENST00000572227 430 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AC130289.1-201ENST00000577321 73 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 Y_RNA.772-201ENST00000606692 102 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AP002826.1-201ENST00000608835 315 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 MIR376A1-201ENST00000616574 68 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AC006065.5-201ENST00000623427 349 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.27□□□□□ -1.89
COL4A3Q01955 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
COL4A3Q01955 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
COL4A3Q01955 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL4A3Q01955 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
COL4A3Q01955 Y_RNA.180-201ENST00000363867 113 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 Y_RNA.277-201ENST00000364754 102 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 RNY3P4-201ENST00000384428 101 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 MIR124-3-201ENST00000384866 87 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 MIR34A-201ENST00000385130 110 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 SNORD58.1-201ENST00000391313 66 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AP000275.1-201ENST00000411943 390 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 RPS12P23-201ENST00000419579 400 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms