Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MT-TW-201ENST00000387382 68 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 MT-TG-201ENST00000387429 68 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
HOXA4Q00056 RPL23AP95-201ENST00000426806 265 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXA4Q00056 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXA4Q00056 RPL21P129-201ENST00000491732 478 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 AF186996.7-201ENST00000492781 209 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 AC104564.1-201ENST00000493028 407 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 ACA59.2-201ENST00000517061 156 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 IGKV2-26-201ENST00000518305 343 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 NDUFB9P3-201ENST00000521269 501 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 IGHV3-76-201ENST00000522465 295 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 AP000867.2-201ENST00000532468 320 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXA4Q00056 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXA4Q00056 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXA4Q00056 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXA4Q00056 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXA4Q00056 AC078899.3-201ENST00000599065 212 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 AC110741.2-201ENST00000605278 268 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 AC068831.7-201ENST00000616954 363 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXA4Q00056 U6.105-201ENST00000637379 88 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 AC002546.1-201ENST00000588041 2504 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXA4Q00056 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXA4Q00056 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXA4Q00056 AC233263.6-201ENST00000631132 1963 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.9□□□□□ -1.94
HOXA4Q00056 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
HOXA4Q00056 AF127577.6-201ENST00000623352 2191 ntBASIC2.9□□□□□ -1.94
HOXA4Q00056 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
HOXA4Q00056 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
HOXA4Q00056 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXA4Q00056 RNU6-222P-201ENST00000362438 107 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 U3.13-201ENST00000364804 214 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 Y_RNA.307-201ENST00000365022 117 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 RNU6-1318P-201ENST00000365389 103 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 Y_RNA.376-201ENST00000365638 108 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 Y_RNA.458-201ENST00000384240 102 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 Y_RNA.504-201ENST00000384481 104 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
HOXA4Q00056 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXA4Q00056 AL161651.1-201ENST00000440882 223 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 RPEP5-201ENST00000441137 268 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 SSXP4-201ENST00000451349 245 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXA4Q00056 RPL30P12-201ENST00000474666 353 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 RPS4XP22-201ENST00000480755 780 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 RPL32P34-201ENST00000486380 400 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 ANXA2P1-201ENST00000505539 926 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 RNU6-579P-201ENST00000516879 102 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 SNORA40.15-201ENST00000516884 107 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 AC034114.1-201ENST00000520293 285 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXA4Q00056 AL442163.3-201ENST00000554110 156 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXA4Q00056 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXA4Q00056 U3.45-201ENST00000607547 219 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXA4Q00056 AC062037.2-201ENST00000610137 73 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 SCARNA4-201ENST00000629045 128 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 AC243829.7-201ENST00000633081 225 ntBASIC2.9□□□□□ -1.95
HOXA4Q00056 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXA4Q00056 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXA4Q00056 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXA4Q00056 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA4Q00056 HSPA8P1-201ENST00000425843 1833 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 AL513302.2-201ENST00000562313 1842 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXA4Q00056 Y_RNA.27-201ENST00000362540 103 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 SNORA36A-201ENST00000384221 132 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 RNU6-17P-201ENST00000384245 107 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 RNU6-198P-201ENST00000384258 104 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 RNU6-18P-201ENST00000384527 107 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 RNU6-713P-201ENST00000384761 107 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 MIR183-201ENST00000384958 110 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 PVALB-202ENST00000404171 422 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXA4Q00056 MIR1183-201ENST00000408856 89 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 RNU6-121P-201ENST00000410525 99 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 RNA5SP38-201ENST00000410750 119 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXA4Q00056 EIF1AXP1-201ENST00000419267 435 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 AC017083.1-201ENST00000428093 483 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA4Q00056 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXA4Q00056 AL358232.1-201ENST00000448030 501 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 LINC01399-202ENST00000458450 244 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 AC087477.1-201ENST00000465747 340 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 SNRPGP3-201ENST00000469405 227 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 RN7SL594P-201ENST00000470590 287 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 RPS26P21-201ENST00000475397 348 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 AC098869.1-201ENST00000481627 292 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 RNU6-408P-201ENST00000515910 100 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 MIR2276-201ENST00000516886 89 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 HSPE1P20-201ENST00000538133 289 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 AP002770.2-201ENST00000543613 532 ntBASIC2.89□□□□□ -1.95
HOXA4Q00056 HSPE1P4-201ENST00000550617 308 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms