Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.76□□□□□ -1.81
RNF4P78317 NDUFB4P10-201ENST00000452541 359 ntBASIC3.76□□□□□ -1.81
RNF4P78317 AC090525.1-201ENST00000479116 478 ntBASIC3.76□□□□□ -1.81
RNF4P78317 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.76□□□□□ -1.81
RNF4P78317 AC107393.1-201ENST00000512403 346 ntBASIC3.76□□□□□ -1.81
RNF4P78317 RNU1-61P-201ENST00000516107 151 ntBASIC3.76□□□□□ -1.81
RNF4P78317 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.76□□□□□ -1.81
RNF4P78317 AL162424.1-201ENST00000602325 221 ntBASIC3.76□□□□□ -1.81
RNF4P78317 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
RNF4P78317 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
RNF4P78317 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.75□□□□□ -1.81
RNF4P78317 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
RNF4P78317 AL133383.2-201ENST00000622958 2336 ntBASIC3.75□□□□□ -1.81
RNF4P78317 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
RNF4P78317 RNA5SP388-201ENST00000362584 119 ntBASIC3.75□□□□□ -1.81
RNF4P78317 RNA5SP479-201ENST00000364858 117 ntBASIC3.75□□□□□ -1.81
RNF4P78317 RNA5SP283-201ENST00000365604 119 ntBASIC3.75□□□□□ -1.81
RNF4P78317 Y_RNA.446-201ENST00000384178 104 ntBASIC3.75□□□□□ -1.81
RNF4P78317 SNORA37-201ENST00000384504 129 ntBASIC3.75□□□□□ -1.81
RNF4P78317 SNORA26.3-201ENST00000391119 136 ntBASIC3.75□□□□□ -1.81
RNF4P78317 PTMAP5-201ENST00000393073 333 ntBASIC3.75□□□□□ -1.81
RNF4P78317 EI24P2-201ENST00000397776 1076 ntBASIC3.75□□□□□ -1.81
RNF4P78317 MIR1193-201ENST00000408109 78 ntBASIC3.75□□□□□ -1.81
RNF4P78317 RNU6-628P-201ENST00000410675 107 ntBASIC3.75□□□□□ -1.81
RNF4P78317 Y_RNA.626-201ENST00000411288 95 ntBASIC3.75□□□□□ -1.81
RNF4P78317 AL691449.1-201ENST00000426570 421 ntBASIC3.75□□□□□ -1.81
RNF4P78317 AC092017.2-201ENST00000427600 362 ntBASIC3.75□□□□□ -1.81
RNF4P78317 SETP5-201ENST00000437270 562 ntBASIC3.75□□□□□ -1.81
RNF4P78317 RNU6-1198P-201ENST00000516904 67 ntBASIC3.75□□□□□ -1.81
RNF4P78317 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.75□□□□□ -1.81
RNF4P78317 AP002392.1-201ENST00000537692 208 ntBASIC3.75□□□□□ -1.81
RNF4P78317 AC008749.1-201ENST00000597650 306 ntBASIC3.75□□□□□ -1.81
RNF4P78317 MIR6868-201ENST00000611215 58 ntBASIC3.75□□□□□ -1.81
RNF4P78317 AC010999.1-201ENST00000611856 324 ntBASIC3.75□□□□□ -1.81
RNF4P78317 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.75□□□□□ -1.81
RNF4P78317 AC048347.1-201ENST00000624621 427 ntBASIC3.75□□□□□ -1.81
RNF4P78317 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
RNF4P78317 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
RNF4P78317 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
RNF4P78317 ZNF204P-201ENST00000416749 2397 ntBASIC3.75□□□□□ -1.81
RNF4P78317 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.75□□□□□ -1.81
RNF4P78317 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
RNF4P78317 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
RNF4P78317 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.74□□□□□ -1.81
RNF4P78317 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.74□□□□□ -1.81
RNF4P78317 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.74□□□□□ -1.81
RNF4P78317 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
RNF4P78317 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
RNF4P78317 Y_RNA.331-201ENST00000365267 102 ntBASIC3.74□□□□□ -1.81
RNF4P78317 SNORA1.3-201ENST00000384676 136 ntBASIC3.74□□□□□ -1.81
RNF4P78317 RNU6-493P-201ENST00000391321 108 ntBASIC3.74□□□□□ -1.81
RNF4P78317 HSPE1P26-201ENST00000405341 275 ntBASIC3.74□□□□□ -1.81
RNF4P78317 RN7SKP53-201ENST00000411337 315 ntBASIC3.74□□□□□ -1.81
RNF4P78317 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.74□□□□□ -1.81
RNF4P78317 SNRPGP3-201ENST00000469405 227 ntBASIC3.74□□□□□ -1.81
RNF4P78317 AL049830.2-201ENST00000480072 201 ntBASIC3.74□□□□□ -1.81
RNF4P78317 RPL30P14-201ENST00000482744 348 ntBASIC3.74□□□□□ -1.81
RNF4P78317 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.74□□□□□ -1.81
RNF4P78317 RPS26P15-201ENST00000488067 348 ntBASIC3.74□□□□□ -1.81
RNF4P78317 AC091959.1-201ENST00000495857 238 ntBASIC3.74□□□□□ -1.81
RNF4P78317 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.74□□□□□ -1.81
RNF4P78317 IFITM8P-201ENST00000522529 394 ntBASIC3.74□□□□□ -1.81
RNF4P78317 RPL21P9-201ENST00000556149 474 ntBASIC3.74□□□□□ -1.81
RNF4P78317 AC055872.1-201ENST00000570978 278 ntBASIC3.74□□□□□ -1.81
RNF4P78317 AC005176.2-201ENST00000596933 147 ntBASIC3.74□□□□□ -1.81
RNF4P78317 AC006001.4-201ENST00000622243 395 ntBASIC3.74□□□□□ -1.81
RNF4P78317 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
RNF4P78317 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.74□□□□□ -1.81
RNF4P78317 AC018555.1-201ENST00000567548 1980 ntBASIC3.74□□□□□ -1.81
RNF4P78317 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
RNF4P78317 AF117829.1-206ENST00000621883 3802 ntBASIC3.74□□□□□ -1.81
RNF4P78317 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.74□□□□□ -1.81
RNF4P78317 AC004944.1-201ENST00000517807 3059 ntBASIC3.74□□□□□ -1.81
RNF4P78317 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.74□□□□□ -1.81
RNF4P78317 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.73□□□□□ -1.81
RNF4P78317 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
RNF4P78317 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.73□□□□□ -1.81
RNF4P78317 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.73□□□□□ -1.81
RNF4P78317 RNU6-487P-201ENST00000365430 104 ntBASIC3.73□□□□□ -1.81
RNF4P78317 SNORA57.1-201ENST00000391227 145 ntBASIC3.73□□□□□ -1.81
RNF4P78317 Y_RNA.590-201ENST00000410140 107 ntBASIC3.73□□□□□ -1.81
RNF4P78317 RNA5SP390-201ENST00000410191 113 ntBASIC3.73□□□□□ -1.81
RNF4P78317 Y_RNA.595-201ENST00000410403 105 ntBASIC3.73□□□□□ -1.81
RNF4P78317 RNU2-49P-201ENST00000410666 184 ntBASIC3.73□□□□□ -1.81
RNF4P78317 RNU2-37P-201ENST00000410695 177 ntBASIC3.73□□□□□ -1.81
RNF4P78317 AC023141.4-201ENST00000412031 328 ntBASIC3.73□□□□□ -1.81
RNF4P78317 AC112220.1-201ENST00000434628 355 ntBASIC3.73□□□□□ -1.81
RNF4P78317 RPS15AP5-201ENST00000436276 388 ntBASIC3.73□□□□□ -1.81
RNF4P78317 RPL7P49-201ENST00000471402 708 ntBASIC3.73□□□□□ -1.81
RNF4P78317 RN7SL271P-201ENST00000487601 295 ntBASIC3.73□□□□□ -1.81
RNF4P78317 Y_RNA.679-201ENST00000516416 91 ntBASIC3.73□□□□□ -1.81
RNF4P78317 SNORA25.14-201ENST00000516481 132 ntBASIC3.73□□□□□ -1.81
RNF4P78317 AP000867.2-201ENST00000532468 320 ntBASIC3.73□□□□□ -1.81
RNF4P78317 MIR5047-201ENST00000579212 100 ntBASIC3.73□□□□□ -1.81
RNF4P78317 VN1R85P-201ENST00000601587 426 ntBASIC3.73□□□□□ -1.81
RNF4P78317 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC3.73□□□□□ -1.81
RNF4P78317 U6.98-201ENST00000637157 84 ntBASIC3.73□□□□□ -1.81
RNF4P78317 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
RNF4P78317 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.73□□□□□ -1.81
RNF4P78317 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms