Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RNU6-1141P-201ENST00000364520 107 ntBASIC2.8□□□□□ -1.96
SOX2P48431 RNU6-622P-201ENST00000384272 103 ntBASIC2.8□□□□□ -1.96
SOX2P48431 SNORA46-201ENST00000384762 135 ntBASIC2.8□□□□□ -1.96
SOX2P48431 SNORA57.1-201ENST00000391227 145 ntBASIC2.8□□□□□ -1.96
SOX2P48431 RPL23AP95-201ENST00000426806 265 ntBASIC2.8□□□□□ -1.96
SOX2P48431 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX2P48431 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.8□□□□□ -1.96
SOX2P48431 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX2P48431 UQCRHP3-201ENST00000451503 251 ntBASIC2.8□□□□□ -1.96
SOX2P48431 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX2P48431 RBMY2UP-201ENST00000453474 324 ntBASIC2.8□□□□□ -1.96
SOX2P48431 AC104564.1-201ENST00000493028 407 ntBASIC2.8□□□□□ -1.96
SOX2P48431 AC015911.1-201ENST00000495111 156 ntBASIC2.8□□□□□ -1.96
SOX2P48431 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX2P48431 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX2P48431 RNU4-77P-201ENST00000516692 156 ntBASIC2.8□□□□□ -1.96
SOX2P48431 IGKV3OR22-2-201ENST00000517943 313 ntBASIC2.8□□□□□ -1.96
SOX2P48431 AC144568.1-201ENST00000520139 137 ntBASIC2.8□□□□□ -1.96
SOX2P48431 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX2P48431 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.8□□□□□ -1.96
SOX2P48431 MIR4680-201ENST00000580906 66 ntBASIC2.8□□□□□ -1.96
SOX2P48431 AC090897.2-201ENST00000581715 130 ntBASIC2.8□□□□□ -1.96
SOX2P48431 MIR4276-201ENST00000584832 70 ntBASIC2.8□□□□□ -1.96
SOX2P48431 AL391813.1-201ENST00000603098 260 ntBASIC2.8□□□□□ -1.96
SOX2P48431 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.8□□□□□ -1.96
SOX2P48431 MIR1244-1-201ENST00000612829 85 ntBASIC2.8□□□□□ -1.96
SOX2P48431 AL138825.1-201ENST00000618587 192 ntBASIC2.8□□□□□ -1.96
SOX2P48431 AL606534.2-204ENST00000635008 178 ntBASIC2.8□□□□□ -1.96
SOX2P48431 MIR1244-3-201ENST00000635744 85 ntBASIC2.8□□□□□ -1.96
SOX2P48431 MIR1244-2-201ENST00000636449 85 ntBASIC2.8□□□□□ -1.96
SOX2P48431 MIR1244-4-202ENST00000636813 85 ntBASIC2.8□□□□□ -1.96
SOX2P48431 AC009093.8-201ENST00000641769 292 ntBASIC2.8□□□□□ -1.96
SOX2P48431 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
SOX2P48431 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
SOX2P48431 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
SOX2P48431 AC008669.1-201ENST00000565823 2178 ntBASIC2.8□□□□□ -1.96
SOX2P48431 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
SOX2P48431 PTER-201ENST00000298942 3448 ntTSL 5 BASIC2.8□□□□□ -1.96
SOX2P48431 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.79□□□□□ -1.96
SOX2P48431 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.79□□□□□ -1.96
SOX2P48431 MTND5P1-201ENST00000445440 1375 ntBASIC2.79□□□□□ -1.96
SOX2P48431 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
SOX2P48431 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
SOX2P48431 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.79□□□□□ -1.96
SOX2P48431 RNU6-1286P-201ENST00000383871 107 ntBASIC2.79□□□□□ -1.96
SOX2P48431 RNA5SP354-201ENST00000391247 136 ntBASIC2.79□□□□□ -1.96
SOX2P48431 RNA5SP494-201ENST00000410653 129 ntBASIC2.79□□□□□ -1.96
SOX2P48431 CYCSP19-201ENST00000411715 316 ntBASIC2.79□□□□□ -1.96
SOX2P48431 AC113618.1-201ENST00000416747 285 ntBASIC2.79□□□□□ -1.96
SOX2P48431 RPL39P29-201ENST00000447779 157 ntBASIC2.79□□□□□ -1.96
SOX2P48431 AL353705.4-201ENST00000449661 238 ntBASIC2.79□□□□□ -1.96
SOX2P48431 RPL30P12-201ENST00000474666 353 ntBASIC2.79□□□□□ -1.96
SOX2P48431 AC106707.2-201ENST00000484182 374 ntBASIC2.79□□□□□ -1.96
SOX2P48431 GZMAP1-201ENST00000503054 631 ntBASIC2.79□□□□□ -1.96
SOX2P48431 AC091874.1-201ENST00000511402 339 ntBASIC2.79□□□□□ -1.96
SOX2P48431 RNU7-175P-201ENST00000515915 61 ntBASIC2.79□□□□□ -1.96
SOX2P48431 RNU6-475P-201ENST00000516073 104 ntBASIC2.79□□□□□ -1.96
SOX2P48431 SNORA31.26-201ENST00000517250 137 ntBASIC2.79□□□□□ -1.96
SOX2P48431 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.79□□□□□ -1.96
SOX2P48431 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.79□□□□□ -1.96
SOX2P48431 MRPS36P4-201ENST00000534436 298 ntBASIC2.79□□□□□ -1.96
SOX2P48431 HSPE1P4-201ENST00000550617 308 ntBASIC2.79□□□□□ -1.96
SOX2P48431 AC007375.1-201ENST00000554513 578 ntBASIC2.79□□□□□ -1.96
SOX2P48431 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC2.79□□□□□ -1.96
SOX2P48431 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.79□□□□□ -1.96
SOX2P48431 AL355877.2-201ENST00000603670 358 ntBASIC2.79□□□□□ -1.96
SOX2P48431 RNU6-91P-201ENST00000607774 107 ntBASIC2.79□□□□□ -1.96
SOX2P48431 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.79□□□□□ -1.96
SOX2P48431 MAPK10-322ENST00000641485 4530 ntBASIC2.79□□□□□ -1.96
SOX2P48431 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
SOX2P48431 AC093831.2-201ENST00000624393 3427 ntBASIC2.79□□□□□ -1.96
SOX2P48431 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.79□□□□□ -1.96
SOX2P48431 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
SOX2P48431 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
SOX2P48431 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.79□□□□□ -1.96
SOX2P48431 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.78□□□□□ -1.96
SOX2P48431 RNU4-42P-201ENST00000364738 142 ntBASIC2.78□□□□□ -1.96
SOX2P48431 RNU4-9P-201ENST00000364951 139 ntBASIC2.78□□□□□ -1.96
SOX2P48431 Y_RNA.459-201ENST00000384251 102 ntBASIC2.78□□□□□ -1.96
SOX2P48431 Y_RNA.504-201ENST00000384481 104 ntBASIC2.78□□□□□ -1.96
SOX2P48431 MIR218-2-201ENST00000385006 110 ntBASIC2.78□□□□□ -1.96
SOX2P48431 SNORA12.2-201ENST00000391040 156 ntBASIC2.78□□□□□ -1.96
SOX2P48431 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.78□□□□□ -1.96
SOX2P48431 RNU6-985P-201ENST00000410182 104 ntBASIC2.78□□□□□ -1.96
SOX2P48431 Y_RNA.605-201ENST00000410577 105 ntBASIC2.78□□□□□ -1.96
SOX2P48431 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.78□□□□□ -1.96
SOX2P48431 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC2.78□□□□□ -1.96
SOX2P48431 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.78□□□□□ -1.96
SOX2P48431 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.78□□□□□ -1.96
SOX2P48431 AC016632.1-201ENST00000503994 196 ntBASIC2.78□□□□□ -1.96
SOX2P48431 RNU6-1137P-201ENST00000517073 99 ntBASIC2.78□□□□□ -1.96
SOX2P48431 Y_RNA.720-201ENST00000517166 92 ntBASIC2.78□□□□□ -1.96
SOX2P48431 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.78□□□□□ -1.96
SOX2P48431 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC2.78□□□□□ -1.96
SOX2P48431 AC016256.1-201ENST00000547971 354 ntBASIC2.78□□□□□ -1.96
SOX2P48431 DNAJC8P1-201ENST00000554535 372 ntBASIC2.78□□□□□ -1.96
SOX2P48431 HSBP1P1-201ENST00000555205 166 ntBASIC2.78□□□□□ -1.96
SOX2P48431 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.78□□□□□ -1.96
SOX2P48431 AC106785.1-201ENST00000565935 262 ntBASIC2.78□□□□□ -1.96
SOX2P48431 AC105137.2-201ENST00000569073 466 ntBASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms