Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.66□□□□□ -2.14
RFX3P48380 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC1.66□□□□□ -2.14
RFX3P48380 MTCYBP1-201ENST00000454315 1119 ntBASIC1.66□□□□□ -2.14
RFX3P48380 RPS29P11-201ENST00000496507 171 ntBASIC1.66□□□□□ -2.14
RFX3P48380 AC010486.2-201ENST00000505572 483 ntBASIC1.66□□□□□ -2.14
RFX3P48380 MTCYBP40-201ENST00000509390 1135 ntBASIC1.66□□□□□ -2.14
RFX3P48380 AC116337.1-201ENST00000509680 687 ntBASIC1.66□□□□□ -2.14
RFX3P48380 RNU6-965P-201ENST00000516721 96 ntBASIC1.66□□□□□ -2.14
RFX3P48380 SNORA18.6-201ENST00000516792 115 ntBASIC1.66□□□□□ -2.14
RFX3P48380 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.66□□□□□ -2.14
RFX3P48380 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.66□□□□□ -2.14
RFX3P48380 DUXAP5-201ENST00000529668 529 ntBASIC1.66□□□□□ -2.14
RFX3P48380 AP002453.2-201ENST00000533503 320 ntBASIC1.66□□□□□ -2.14
RFX3P48380 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.66□□□□□ -2.14
RFX3P48380 AC024614.2-201ENST00000577584 372 ntBASIC1.66□□□□□ -2.14
RFX3P48380 AC073539.2-201ENST00000597113 165 ntBASIC1.66□□□□□ -2.14
RFX3P48380 AC078795.2-201ENST00000602835 1252 ntBASIC1.66□□□□□ -2.14
RFX3P48380 AL670379.2-201ENST00000604983 252 ntBASIC1.66□□□□□ -2.14
RFX3P48380 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.66□□□□□ -2.14
RFX3P48380 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.66□□□□□ -2.14
RFX3P48380 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
RFX3P48380 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
RFX3P48380 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.65□□□□□ -2.14
RFX3P48380 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
RFX3P48380 RNU6-212P-201ENST00000362642 104 ntBASIC1.65□□□□□ -2.15
RFX3P48380 Y_RNA.169-201ENST00000363745 96 ntBASIC1.65□□□□□ -2.15
RFX3P48380 SNORA62.1-201ENST00000364287 154 ntBASIC1.65□□□□□ -2.15
RFX3P48380 RNU6-1164P-201ENST00000364428 107 ntBASIC1.65□□□□□ -2.15
RFX3P48380 RNU6-234P-201ENST00000365229 104 ntBASIC1.65□□□□□ -2.15
RFX3P48380 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
RFX3P48380 RNU6-45P-201ENST00000384471 107 ntBASIC1.65□□□□□ -2.15
RFX3P48380 RNU6-297P-201ENST00000384636 107 ntBASIC1.65□□□□□ -2.15
RFX3P48380 MIR597-201ENST00000384968 97 ntBASIC1.65□□□□□ -2.15
RFX3P48380 MIR29B2-201ENST00000385055 81 ntBASIC1.65□□□□□ -2.15
RFX3P48380 MIR9-3-201ENST00000385084 90 ntBASIC1.65□□□□□ -2.15
RFX3P48380 RNU6-550P-201ENST00000391057 101 ntBASIC1.65□□□□□ -2.15
RFX3P48380 RNU4-46P-201ENST00000410818 138 ntBASIC1.65□□□□□ -2.15
RFX3P48380 RNU6-195P-201ENST00000411352 109 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC1.65□□□□□ -2.15
RFX3P48380 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.65□□□□□ -2.15
RFX3P48380 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC1.65□□□□□ -2.15
RFX3P48380 RPL31P35-201ENST00000431058 377 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AC000111.3-201ENST00000433478 193 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AL645568.3-201ENST00000433683 316 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AL596276.1-201ENST00000434465 418 ntBASIC1.65□□□□□ -2.15
RFX3P48380 MTND2P29-201ENST00000438595 412 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AL022238.1-201ENST00000442557 355 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.65□□□□□ -2.15
RFX3P48380 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC1.65□□□□□ -2.15
RFX3P48380 PPP1R2P5-201ENST00000457256 603 ntBASIC1.65□□□□□ -2.15
RFX3P48380 GMFBP1-201ENST00000467831 427 ntBASIC1.65□□□□□ -2.15
RFX3P48380 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.15
RFX3P48380 MTCO3P9-201ENST00000506989 781 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AC079140.5-201ENST00000507882 310 ntBASIC1.65□□□□□ -2.15
RFX3P48380 MTND3P25-201ENST00000509243 135 ntBASIC1.65□□□□□ -2.15
RFX3P48380 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.65□□□□□ -2.15
RFX3P48380 AC022616.8-201ENST00000533569 253 ntBASIC1.65□□□□□ -2.15
RFX3P48380 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.65□□□□□ -2.15
RFX3P48380 AC007375.1-201ENST00000554513 578 ntBASIC1.65□□□□□ -2.15
RFX3P48380 MIR4775-201ENST00000581168 75 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AC025811.1-201ENST00000604312 472 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AC025754.2-201ENST00000606491 432 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AC109347.2-201ENST00000610220 349 ntBASIC1.65□□□□□ -2.15
RFX3P48380 MIR8081-201ENST00000611533 95 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AL159153.1-201ENST00000619688 317 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AC084768.2-201ENST00000622736 221 ntBASIC1.65□□□□□ -2.15
RFX3P48380 AP000770.2-201ENST00000623694 100 ntBASIC1.65□□□□□ -2.15
RFX3P48380 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
RFX3P48380 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.64□□□□□ -2.15
RFX3P48380 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.64□□□□□ -2.15
RFX3P48380 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.64□□□□□ -2.15
RFX3P48380 snoU2_19.1-201ENST00000362361 80 ntBASIC1.64□□□□□ -2.15
RFX3P48380 RNU6-78P-201ENST00000362897 107 ntBASIC1.64□□□□□ -2.15
RFX3P48380 SNORD56.1-201ENST00000362913 68 ntBASIC1.64□□□□□ -2.15
RFX3P48380 MIR29C-201ENST00000385231 88 ntBASIC1.64□□□□□ -2.15
RFX3P48380 RNU11-3P-201ENST00000391111 133 ntBASIC1.64□□□□□ -2.15
RFX3P48380 RNA5SP212-201ENST00000391223 107 ntBASIC1.64□□□□□ -2.15
RFX3P48380 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.64□□□□□ -2.15
RFX3P48380 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.64□□□□□ -2.15
RFX3P48380 SNORD56-201ENST00000413522 71 ntBASIC1.64□□□□□ -2.15
RFX3P48380 AC133104.1-201ENST00000429100 218 ntBASIC1.64□□□□□ -2.15
RFX3P48380 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.64□□□□□ -2.15
RFX3P48380 RPL30P12-201ENST00000474666 353 ntBASIC1.64□□□□□ -2.15
RFX3P48380 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC1.64□□□□□ -2.15
RFX3P48380 AC107393.1-201ENST00000512403 346 ntBASIC1.64□□□□□ -2.15
RFX3P48380 PTP4A1P4-201ENST00000512479 322 ntBASIC1.64□□□□□ -2.15
RFX3P48380 AC117532.1-201ENST00000514638 323 ntBASIC1.64□□□□□ -2.15
RFX3P48380 LRRC34P2-201ENST00000514850 553 ntBASIC1.64□□□□□ -2.15
RFX3P48380 RNA5SP503-201ENST00000517047 117 ntBASIC1.64□□□□□ -2.15
RFX3P48380 AC060788.1-201ENST00000521318 469 ntBASIC1.64□□□□□ -2.15
RFX3P48380 AP005660.1-201ENST00000522972 293 ntBASIC1.64□□□□□ -2.15
RFX3P48380 AK6P1-201ENST00000540219 478 ntBASIC1.64□□□□□ -2.15
RFX3P48380 AC022254.1-201ENST00000567857 235 ntBASIC1.64□□□□□ -2.15
RFX3P48380 AC012414.6-201ENST00000568241 401 ntBASIC1.64□□□□□ -2.15
RFX3P48380 MIR3618-201ENST00000580330 88 ntBASIC1.64□□□□□ -2.15
RFX3P48380 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.64□□□□□ -2.15
RFX3P48380 SEPT7P9-203ENST00000604116 343 ntBASIC1.64□□□□□ -2.15
RFX3P48380 AL136363.2-201ENST00000604173 851 ntBASIC1.64□□□□□ -2.15
RFX3P48380 AC008945.2-201ENST00000606056 604 ntBASIC1.64□□□□□ -2.15
RFX3P48380 AL353997.5-201ENST00000618886 171 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms