Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SNORA48.5-201ENST00000391143 135 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC4.05□□□□□ -1.76
COL8A1P27658 PRSS3P4-201ENST00000453323 162 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.05□□□□□ -1.76
COL8A1P27658 RNA5SP103-201ENST00000459503 118 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 KC877373.1-201ENST00000479066 408 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.05□□□□□ -1.76
COL8A1P27658 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.05□□□□□ -1.76
COL8A1P27658 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.05□□□□□ -1.76
COL8A1P27658 AC015720.1-201ENST00000565251 277 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 AC007012.1-201ENST00000567192 175 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 MIR3921-201ENST00000577308 85 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 MIR4716-201ENST00000579628 84 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 MIR4512-201ENST00000583257 77 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL8A1P27658 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL8A1P27658 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL8A1P27658 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.05□□□□□ -1.76
COL8A1P27658 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL8A1P27658 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.05□□□□□ -1.76
COL8A1P27658 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL8A1P27658 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL8A1P27658 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL8A1P27658 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL8A1P27658 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL8A1P27658 RNU6-309P-201ENST00000364573 106 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 RNA5SP125-201ENST00000364843 120 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 Y_RNA.415-201ENST00000384012 112 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 SNORA72-201ENST00000384339 132 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 MIR549A-201ENST00000385268 96 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 MIR1278-201ENST00000408753 81 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 AC093578.1-201ENST00000415219 368 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.04□□□□□ -1.76
COL8A1P27658 RPS29P7-201ENST00000439662 171 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 RN7SL98P-201ENST00000462271 300 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 RPL21P10-201ENST00000463521 490 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 RPL31P41-201ENST00000477967 372 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 RNA5SP281-201ENST00000516504 135 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 RNU6-703P-201ENST00000516946 107 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 RNU6-1183P-201ENST00000517054 60 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 CR383656.8-201ENST00000549046 145 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.04□□□□□ -1.76
COL8A1P27658 AC105129.1-201ENST00000560250 297 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.04□□□□□ -1.76
COL8A1P27658 MIR6839-201ENST00000620425 113 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 AC112484.5-201ENST00000624189 228 ntBASIC4.04□□□□□ -1.76
COL8A1P27658 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.04□□□□□ -1.76
COL8A1P27658 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL8A1P27658 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
COL8A1P27658 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.04□□□□□ -1.76
COL8A1P27658 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.04□□□□□ -1.76
COL8A1P27658 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL8A1P27658 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.03□□□□□ -1.76
COL8A1P27658 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.03□□□□□ -1.76
COL8A1P27658 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL8A1P27658 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.03□□□□□ -1.76
COL8A1P27658 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.03□□□□□ -1.76
COL8A1P27658 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL8A1P27658 MIR383-201ENST00000362257 73 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 RNU1-132P-201ENST00000364300 164 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 Y_RNA.361-201ENST00000365515 120 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 RNY1P7-201ENST00000384743 110 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 MIR483-201ENST00000385070 76 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL8A1P27658 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.03□□□□□ -1.76
COL8A1P27658 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC4.03□□□□□ -1.76
COL8A1P27658 AL691449.1-201ENST00000426570 421 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 SNRPEP9-201ENST00000436794 238 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 RPL26P9-201ENST00000457466 433 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 RPS4XP2-201ENST00000458402 793 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 RN7SL585P-201ENST00000470538 280 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 AC006517.1-201ENST00000480485 328 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 RN7SL441P-201ENST00000492388 296 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.03□□□□□ -1.76
COL8A1P27658 AL160236.1-201ENST00000556317 195 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 AC020895.1-201ENST00000595362 272 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 AC008739.3-201ENST00000603262 127 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 SNRPGP20-201ENST00000604477 205 ntBASIC4.03□□□□□ -1.76
COL8A1P27658 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC4.03□□□□□ -1.76
COL8A1P27658 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL8A1P27658 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL8A1P27658 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL8A1P27658 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL8A1P27658 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
COL8A1P27658 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
COL8A1P27658 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.02□□□□□ -1.77
COL8A1P27658 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL8A1P27658 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL8A1P27658 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL8A1P27658 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.02□□□□□ -1.77
COL8A1P27658 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL8A1P27658 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.02□□□□□ -1.77
COL8A1P27658 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.02□□□□□ -1.77
COL8A1P27658 AC079780.1-201ENST00000428259 207 ntBASIC4.02□□□□□ -1.77
COL8A1P27658 AL445687.1-201ENST00000439946 251 ntBASIC4.02□□□□□ -1.77
COL8A1P27658 H2AFZP5-201ENST00000446960 382 ntBASIC4.02□□□□□ -1.77
COL8A1P27658 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.02□□□□□ -1.77
COL8A1P27658 AC010469.1-201ENST00000463864 576 ntBASIC4.02□□□□□ -1.77
COL8A1P27658 MIR4286-201ENST00000580651 93 ntBASIC4.02□□□□□ -1.77
COL8A1P27658 SNORA74C-1-201ENST00000580726 201 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms