Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA3O43365 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA3O43365 AL021368.2-201ENST00000606125 5352 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXA3O43365 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
HOXA3O43365 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA3O43365 SNORD115-8-201ENST00000363856 82 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 RNA5SP399-201ENST00000364003 117 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 SNORD115-38-201ENST00000365037 82 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 Y_RNA.352-201ENST00000365439 102 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 RNU6-198P-201ENST00000384258 104 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 MIR3074-201ENST00000384885 81 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 PTMAP5-201ENST00000393073 333 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 HLFP1-201ENST00000402375 499 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 AL603910.2-201ENST00000407268 136 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 MIR1251-201ENST00000408552 70 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 SNORA3.3-201ENST00000408712 125 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 RNA5SP306-201ENST00000411087 107 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 AC012306.1-201ENST00000423267 114 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 AL445305.1-201ENST00000432577 575 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 RPS15AP5-201ENST00000436276 388 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 SNORA71B-202ENST00000439232 272 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA3O43365 AP000705.1-201ENST00000454567 350 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 snoU13.22-201ENST00000459428 104 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA3O43365 RNU6-496P-201ENST00000516145 99 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 RN7SKP49-201ENST00000516675 260 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 AP000867.2-201ENST00000532468 320 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXA3O43365 AC091152.3-201ENST00000604227 325 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 AC110741.2-201ENST00000605278 268 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA3O43365 AC068831.7-201ENST00000616954 363 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 FAM35DP-201ENST00000323387 2712 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA3O43365 AL079305.1-201ENST00000623159 3008 ntBASIC3.16□□□□□ -1.9
HOXA3O43365 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA3O43365 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA3O43365 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.15□□□□□ -1.9
HOXA3O43365 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA3O43365 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
HOXA3O43365 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.91
HOXA3O43365 RNU6-102P-201ENST00000384485 104 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 RNU6-19P-201ENST00000384718 107 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 MIR7-3-201ENST00000384898 110 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 MIR329-1-201ENST00000385028 80 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 U3.19-201ENST00000390893 196 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 SNORA26.3-201ENST00000391119 136 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 AC019205.3-201ENST00000424573 156 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA3O43365 RNU5B-3P-201ENST00000516601 115 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 SCARNA24.2-201ENST00000516968 130 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 AL078605.1-201ENST00000603529 500 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 SNORA51-201ENST00000606420 132 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 AC012603.1-201ENST00000606424 528 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXA3O43365 AC106871.1-201ENST00000568324 3102 ntBASIC3.15□□□□□ -1.91
HOXA3O43365 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA3O43365 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
HOXA3O43365 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA3O43365 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA3O43365 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
HOXA3O43365 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
HOXA3O43365 MAPK10-373ENST00000641983 6772 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 ZNF962P-201ENST00000443465 3140 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA3O43365 Y_RNA.54-201ENST00000362766 105 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 Y_RNA.65-201ENST00000362846 100 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 SNORD46.1-201ENST00000364139 104 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 RNU6-200P-201ENST00000364743 107 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 Y_RNA.277-201ENST00000364754 102 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 SNORA73.2-201ENST00000364946 201 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 SNORA70.4-201ENST00000365509 134 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 RNU6-1145P-201ENST00000384246 107 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 Y_RNA.462-201ENST00000384268 102 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 RNU1-89P-201ENST00000384592 164 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 RNU2-14P-201ENST00000411053 191 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 RNU6-1001P-201ENST00000411265 100 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 AL139109.1-201ENST00000455491 297 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 RNU7-23P-201ENST00000459465 62 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 AC107626.1-201ENST00000471084 183 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 RN7SL271P-201ENST00000487601 295 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA3O43365 RNU6-138P-201ENST00000515952 107 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 SNORD19.2-201ENST00000516978 73 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 AP006245.1-201ENST00000522549 120 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXA3O43365 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA3O43365 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA3O43365 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA3O43365 AC087499.8-201ENST00000578406 226 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 AL034408.1-202ENST00000636088 415 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXA3O43365 AC073073.2-201ENST00000609827 2578 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA3O43365 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms