Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.94□□□□□ -1.94
NPHP1O15259 AC010297.1-201ENST00000623948 149 ntBASIC2.94□□□□□ -1.94
NPHP1O15259 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.94□□□□□ -1.94
NPHP1O15259 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.94□□□□□ -1.94
NPHP1O15259 RNU6-212P-201ENST00000362642 104 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 RNU6-1210P-201ENST00000363775 107 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 RNA5SP99-201ENST00000364020 114 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 SNORA69-201ENST00000383895 132 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 RNU1-138P-201ENST00000384093 164 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 SNORA41-201ENST00000384675 132 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
NPHP1O15259 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
NPHP1O15259 RPS12P2-201ENST00000439728 269 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.93□□□□□ -1.94
NPHP1O15259 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.93□□□□□ -1.94
NPHP1O15259 AL139109.1-201ENST00000455491 297 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.93□□□□□ -1.94
NPHP1O15259 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.93□□□□□ -1.94
NPHP1O15259 COPS8P3-201ENST00000526024 482 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 IMMP1LP2-201ENST00000552954 492 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.93□□□□□ -1.94
NPHP1O15259 AC026464.5-201ENST00000562497 722 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 MIR4446-201ENST00000578505 67 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 AL136363.2-201ENST00000604173 851 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 Z82243.1-201ENST00000609432 473 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 AC008121.3-201ENST00000618726 433 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 FO624990.1-201ENST00000636373 85 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 AC241585.2-209ENST00000638217 143 ntBASIC2.93□□□□□ -1.94
NPHP1O15259 MTND5P6-201ENST00000422338 1798 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
NPHP1O15259 RNU6-428P-201ENST00000362942 107 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 RNU6-1085P-201ENST00000363576 107 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 SNORA67.1-201ENST00000364749 141 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 CBX3P9-201ENST00000402326 552 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 AL591034.2-201ENST00000402839 359 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 RN7SKP32-201ENST00000410167 303 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 AL117339.3-201ENST00000418733 162 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.92□□□□□ -1.94
NPHP1O15259 RPL39P29-201ENST00000447779 157 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 AC087884.1-201ENST00000469738 328 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 RPS27P27-201ENST00000498779 255 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 HMGB3P3-201ENST00000510526 400 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.92□□□□□ -1.94
NPHP1O15259 RNU6-835P-201ENST00000516974 104 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 AC069113.1-201ENST00000517763 267 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.92□□□□□ -1.94
NPHP1O15259 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.92□□□□□ -1.94
NPHP1O15259 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.92□□□□□ -1.94
NPHP1O15259 AL049779.4-201ENST00000604500 156 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 AC245884.12-201ENST00000615364 59 ntBASIC2.92□□□□□ -1.94
NPHP1O15259 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
NPHP1O15259 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
NPHP1O15259 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
NPHP1O15259 SNORA3A-201ENST00000364113 130 ntBASIC2.91□□□□□ -1.94
NPHP1O15259 RNU6-336P-201ENST00000364891 107 ntBASIC2.91□□□□□ -1.94
NPHP1O15259 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.91□□□□□ -1.94
NPHP1O15259 AC124916.1-201ENST00000444020 547 ntBASIC2.91□□□□□ -1.94
NPHP1O15259 MTND1P1-201ENST00000445453 368 ntBASIC2.91□□□□□ -1.94
NPHP1O15259 PSPHP1-201ENST00000450062 261 ntBASIC2.91□□□□□ -1.94
NPHP1O15259 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.91□□□□□ -1.94
NPHP1O15259 MTCO3P38-201ENST00000468910 766 ntBASIC2.91□□□□□ -1.94
NPHP1O15259 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.91□□□□□ -1.94
NPHP1O15259 RNU6-548P-201ENST00000517083 115 ntBASIC2.91□□□□□ -1.94
NPHP1O15259 RNU6-586P-201ENST00000517265 104 ntBASIC2.91□□□□□ -1.94
NPHP1O15259 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.91□□□□□ -1.94
NPHP1O15259 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.91□□□□□ -1.94
NPHP1O15259 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.91□□□□□ -1.94
NPHP1O15259 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.91□□□□□ -1.94
NPHP1O15259 OR11H5P-201ENST00000554039 926 ntBASIC2.91□□□□□ -1.94
NPHP1O15259 AC091135.1-201ENST00000585943 307 ntBASIC2.91□□□□□ -1.94
NPHP1O15259 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.91□□□□□ -1.94
NPHP1O15259 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.94
NPHP1O15259 Z82209.1-201ENST00000422141 2135 ntBASIC2.9□□□□□ -1.94
NPHP1O15259 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
NPHP1O15259 AC080100.1-201ENST00000624239 5356 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 Y_RNA.41-201ENST00000362646 102 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 RNU1-23P-201ENST00000363361 144 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 Y_RNA.517-201ENST00000384551 106 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 MIR544A-201ENST00000384855 91 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 SNORD37.1-201ENST00000390968 65 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 RN7SKP158-201ENST00000410453 326 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.9□□□□□ -1.95
NPHP1O15259 MORF4L1P6-201ENST00000418771 268 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 TIMM9P3-201ENST00000428659 274 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.9□□□□□ -1.95
NPHP1O15259 AL121601.2-201ENST00000438019 707 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 AC243964.1-201ENST00000441814 261 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.9□□□□□ -1.95
NPHP1O15259 AC019235.1-201ENST00000503847 207 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 AC009646.1-201ENST00000510455 318 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.9□□□□□ -1.95
NPHP1O15259 RNA5SP401-201ENST00000515920 127 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 Y_RNA.693-201ENST00000516641 110 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 CYCSP27-201ENST00000527643 293 ntBASIC2.9□□□□□ -1.95
NPHP1O15259 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.9□□□□□ -1.95
NPHP1O15259 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.9□□□□□ -1.95
NPHP1O15259 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.89□□□□□ -1.95
NPHP1O15259 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.89□□□□□ -1.95
NPHP1O15259 Y_RNA.318-201ENST00000365131 97 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms