Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AC021269.2-201ENST00000532318 330 ntBASIC2.87□□□□□ -1.95
DDX4Q9NQI0 MIR5692C1-201ENST00000585309 91 ntBASIC2.87□□□□□ -1.95
DDX4Q9NQI0 UBE2V2P2-201ENST00000587677 504 ntBASIC2.87□□□□□ -1.95
DDX4Q9NQI0 AL357078.3-201ENST00000607528 618 ntBASIC2.87□□□□□ -1.95
DDX4Q9NQI0 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.87□□□□□ -1.95
DDX4Q9NQI0 Z69720.2-201ENST00000624755 279 ntBASIC2.87□□□□□ -1.95
DDX4Q9NQI0 MIR3199-2-201ENST00000636243 86 ntBASIC2.87□□□□□ -1.95
DDX4Q9NQI0 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
DDX4Q9NQI0 MTND5P6-201ENST00000422338 1798 ntBASIC2.87□□□□□ -1.95
DDX4Q9NQI0 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
DDX4Q9NQI0 RNU6-254P-201ENST00000363377 107 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 MIR518D-201ENST00000385014 87 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 RNA5SP344-201ENST00000411081 104 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.86□□□□□ -1.95
DDX4Q9NQI0 MTND3P8-201ENST00000412909 339 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX4Q9NQI0 AC096649.2-201ENST00000416186 393 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 AL096701.2-201ENST00000416920 238 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 NCOR1P3-201ENST00000420479 303 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 AC009414.1-201ENST00000427200 443 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.86□□□□□ -1.95
DDX4Q9NQI0 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.86□□□□□ -1.95
DDX4Q9NQI0 AC087884.1-201ENST00000469738 328 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 RNU6-864P-201ENST00000516256 108 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
DDX4Q9NQI0 RNU6-323P-201ENST00000521915 107 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 AP000889.2-201ENST00000532684 490 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 AC021739.1-201ENST00000559631 174 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 APOOP1-201ENST00000604695 592 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 CTHRC1P1-201ENST00000605383 469 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX4Q9NQI0 AL121757.2-201ENST00000611223 313 ntBASIC2.86□□□□□ -1.95
DDX4Q9NQI0 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
DDX4Q9NQI0 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.86□□□□□ -1.95
DDX4Q9NQI0 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
DDX4Q9NQI0 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
DDX4Q9NQI0 RNU6-898P-201ENST00000365627 104 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 MIR450B-201ENST00000401182 78 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 SNORD88.1-201ENST00000408684 91 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 Y_RNA.604-201ENST00000410574 102 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 RNU6-1148P-201ENST00000410992 104 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 PGBD4P6-201ENST00000421501 610 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 AL365496.1-201ENST00000426885 215 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 AC092427.1-202ENST00000430569 476 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 AL365400.1-201ENST00000431854 640 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.85□□□□□ -1.95
DDX4Q9NQI0 AL359672.1-201ENST00000442302 409 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 RPL31P41-201ENST00000477967 372 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 HMGN1P12-201ENST00000499125 195 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
DDX4Q9NQI0 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 RNA5SP76-201ENST00000516277 87 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 AC109479.2-201ENST00000517842 174 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.85□□□□□ -1.95
DDX4Q9NQI0 AC025281.1-201ENST00000567026 265 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 MIR5092-201ENST00000583139 88 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 OR1M4P-201ENST00000589199 287 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.85□□□□□ -1.95
DDX4Q9NQI0 MIR1291-201ENST00000627649 87 ntBASIC2.85□□□□□ -1.95
DDX4Q9NQI0 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
DDX4Q9NQI0 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.85□□□□□ -1.95
DDX4Q9NQI0 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
DDX4Q9NQI0 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
DDX4Q9NQI0 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
DDX4Q9NQI0 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
DDX4Q9NQI0 Y_RNA.212-201ENST00000364177 102 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 RNU6-214P-201ENST00000384130 107 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC022028.1-201ENST00000412054 408 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AL358075.3-201ENST00000426289 226 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC104389.3-201ENST00000445629 235 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC233279.1-201ENST00000455300 423 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 RNU6-329P-201ENST00000459618 107 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.84□□□□□ -1.95
DDX4Q9NQI0 RNU4-49P-201ENST00000516080 140 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 Y_RNA.687-201ENST00000516558 91 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 RNU6-256P-201ENST00000516747 97 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC006199.1-201ENST00000548728 219 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC005668.1-201ENST00000571142 476 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.84□□□□□ -1.95
DDX4Q9NQI0 MIR4742-201ENST00000581069 85 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC008121.1-201ENST00000603244 268 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC021646.1-201ENST00000605469 484 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 RNU6-85P-201ENST00000605989 107 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 uc_338.5-201ENST00000611839 155 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AL355073.2-201ENST00000612106 557 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC025253.1-201ENST00000613623 543 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 AC063943.3-201ENST00000615562 356 ntBASIC2.84□□□□□ -1.95
DDX4Q9NQI0 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
DDX4Q9NQI0 RNA5SP432-201ENST00000362480 116 ntBASIC2.83□□□□□ -1.96
DDX4Q9NQI0 VTRNA1-1-201ENST00000363120 99 ntBASIC2.83□□□□□ -1.96
DDX4Q9NQI0 RNU6-867P-201ENST00000364956 107 ntBASIC2.83□□□□□ -1.96
DDX4Q9NQI0 RNU6-831P-201ENST00000384548 107 ntBASIC2.83□□□□□ -1.96
DDX4Q9NQI0 RNU6-1106P-201ENST00000390845 107 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms